RNA id: XM_026936467.2


Basic Information

Item Value
RNA id XM_026936467.2
length 1543
RNA type mRNA
GC content 0.50
exon number 13
gene id acbd5b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27484777 ~ 27494927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTATAcgctttattctttattaaaccTTGTTGCTATAATTTCTCCTCTTCACAGGCTCAGAtagatttatttacattctgtattaatttaataaactcTCAGTAgaatttattatgtatttaaacTCGCGCAGGTCGCACTGATCAAATAACAAAcGATGGAAAACGACAACTCGATTCATCAGAGAAGATTTGAAGCAGCTGTTAAAGTGATGAGGAGTTTACCTGCAGATGGTGCCTTTGTGCCGTCTGACGACATGCTGCTCAGGTTTTACACCTACCACCAACAAGCCACAGTCGGAGCCTGTTACACCTCCGAGCCCTGCGGCTGGGACGCGCTGAGTAAAGCCAAGTGGGAGGCCTGGAAAGGGTTAGGTGACATGTCTAAGGAAGAAGCTATGAAGGCATACGTTGAGGAGATTCTGCTGATTTTGGAGATGATTCCCATGACGGAGGAGGTGTCCGACCTGCTGGACCTGCTCGAATCGTTTTACGAAGtggtggaggatgaggatgaagatgaagatgacgAAACGACCAACAGACCTGCAGTGTCGATGTTATCAgGAAGCAGTGATGAGTGGAGAGGAAGTTCTGTAGAAGACGTAGGTGATGACgtggaggaggaagatgatgcTGAAGATGTGACACGGCTAATGGTGGATAACAGAGCTGAGAGAGGAGGATCTCCGGTGTGTAACAGCAGCATCTCCTCTCTCATCAGAAGCACACACAGCTCCTTAAACACGgacgaggaagaggaggagctgGAGTACACCCGAGAGACGAGCCAAGAGATGAGACGAGAGACGAGACGAGAGATGAGACGAGACTCTCCAGATCGCTTTCTTCAACTCCTCACTGAGGATTGCCTTACAGATGGCAGTGATGTCATTGAGCCGGAACAGCCGAGTGAGGTGTACGGTGACTCGGTGAGAGCTGAAGAGGGTTCAGGAGGCCTCAGAGCAGCTGCAGCTCGAGCCAAAAAGCCGGAGGGGcgagggggaaagagagaggatgaggGTGTGAGTCAGGATGGAAAACCACAGGGAGCAGCACTTCCCCCCCTCTGCACAGCGGCACATGGACCAGTCCAATCTGTCATCCTGTCAGCAGGGAGAGGAAGAGGGTGTGAGTTAGCAGGAGAATCTGTCGCTCCGTTCAGTAATGACGTGACATTGTTGAATGATGGTACAGTCGGCGAGTGTGTGGTGACGGATCCGGTGAACAcacagattgctgtggtgttGTCACGGCTACAGGACGACATGCGGAACGTGTTAGCGAGGCTGAACACGCTGGAGGCTCAGGCCGTGTCTCAGGTTGAAAGGTTCGCTCTCTGCTGTGAGCCTCATACGGCTCTGGCTAACAAGCGACAACCCACGTGTCCATCGGTCATCTCCCAAATCTCAGTGGCATTTCTACTCGTCTGGCCTTCTGTAGCACACTTCTTAGTGCAGCTATACCTTAAGAAGAAAAGGAAGATGAAGCTTTAAAGCCATCCATGAGGCAGATGATCAGAACTCTGctgaaatattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85461 lncRNA downstream 7111 27474765 ~ 27477666 (-) True tsen15
TU85454 lncRNA downstream 39663 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 77958 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 82142 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 198079 27286239 ~ 27286698 (-) True G71955
TU85953 lncRNA upstream 75007 27569244 ~ 27970795 (-) False G72517
TU85956 lncRNA upstream 385301 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA upstream 400276 27894513 ~ 27970795 (-) False G72517
TU86050 lncRNA upstream 418633 27912870 ~ 27958488 (-) True G72607
TU86051 lncRNA upstream 480233 27974470 ~ 27980336 (-) True LOC117597146
XM_034303666.1 mRNA downstream 944 27477467 ~ 27483833 (-) False tsen15
XM_026936527.2 mRNA downstream 29064 27447255 ~ 27455713 (-) True slc35a3b
XM_026936529.2 mRNA downstream 43283 27433692 ~ 27441494 (-) True cmpk
XM_026937061.2 mRNA downstream 52099 27428420 ~ 27432678 (-) True LOC113540508
XM_026936170.2 mRNA upstream 27453 27521690 ~ 27531090 (-) True anxa13l
XM_034303959.1 mRNA upstream 53586 27547823 ~ 27555987 (-) True pcyt1aa
XM_026937162.2 mRNA upstream 53586 27547823 ~ 27555986 (-) False pcyt1aa
XM_026937187.2 mRNA upstream 91337 27585574 ~ 27619191 (-) True gpr158b
XM_026936536.2 mRNA upstream 210044 27704281 ~ 27839097 (-) False dpp6b
XR_003404034.2 other downstream 52099 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 88554 27396151 ~ 27396223 (-) True trnat-ugu_4
trnat-ugu_3 other downstream 89348 27395357 ~ 27395429 (-) True trnat-ugu_3
TU85245 other downstream 280591 27203783 ~ 27204186 (-) True G71909
TU85159 other downstream 383919 27096602 ~ 27100858 (-) True G71832
XR_004578066.1 other upstream 53515 27547752 ~ 27555986 (-) False pcyt1aa
trnat-ugu_7 other upstream 126819 27621056 ~ 27621128 (-) True trnat-ugu_7
trnat-ugu_9 other upstream 130499 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_003404039.2 other upstream 521827 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 741949 28236186 ~ 28236267 (-) True trnas-uga_1

Expression Profile