RNA id: XM_026936482.2


Basic Information

Item Value
RNA id XM_026936482.2
length 4041
RNA type mRNA
GC content 0.53
exon number 12
gene id zzz3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29131186 ~ 29147492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCGGAAAACGGGTGGGAAAGAAAAGTATCGCAGTCTGGAcagaaaaacatggctgccgcCCAGTGCGCAGCAAACCATTTGCGGAAATGAGgtgCCCGTATTCTGCCGCAGAGGAGAGCACCACGATGAGGAGTCAGTAGGCACCCTCCATAGTATGGCCGCGTCCCGTTCTTCGCGTGTCACAAGATCATCAGTGGGGTTAAATGGATTGGACGAGAACTTTTGTGGCCGAACCCTCAGGAACCGCAGCATTGCACAGCCGGAGGAGACCTCGCCTCCTCCCACACCCAGAACTCGCTTGCCCTCGAAGAAGCAGGACTGCCAGCAGAACCAGCAGGCCGGGACTCAATCGGGGAAGGTAGCTGAAGGAGAGTCCTTGCCTACCCACAGGAAACGgggcctgtctgtctctgagaAGGACGAGCCGGAGAAATCGGACGCCTCTGAAAGAGTTCGAGCTGGGGGAGGACAAGAAGCCTCCCCTTCCCAGAAGAGGGCTAAGCGGTGCTCTTGCTCAGGGGAATCCCAAGGAACTGAGGAGGAACCTTCTCCCAAACCTGAGAGCCCTGATCCGGCTGCAGCCAAGGGCAACGATGAGGACTCTAAATCGGACTTTGCTTCAAACTCGCCCTCGGATTCGGGCTTGGCGCTGTCTGTCAGCCTCGACAAAGAGTGCGAGGAGGAAAAGGACGAGGACAAGAAGGAACGCGGTCCTTCTTTGCCAGCCAGCGAATCCCACAAGGCGACCAATGGCCTGGCTGAGGTCCATAAGGATGACTTAGAATCTGCAGCCTTGCCTGCAGAGCCCTGTGCCTGCCCTACCACGCTCACGAACAGTCCCTCGCTGCCCAATGGCAGCCAGGTGGCAGCTTCAACCCTGGACCCCATTGTGCCTTGTACATCTCCGCTTCTTAAACAGGTGGACGAGTCCAATGGCCTTCAGGCCGACAGAGAGAGGAACTGCTCAGCTGAAGAGGCCTCTGAAGCTGTTCTGTCTCTGGAACCGGAGGTCGAGGTTGAAGTAGACGTGGTCGGGGACACTGGCCAGGTCCAGGACGAGCACGTGGCTGAGGAGAGCATTAACGGTGGCCTGCTTGTGGATCTGCAAGACCCTTCAGACGATTGCTCAAATATCTCAGGGGAAACAGCAGGGCTGACCTCCCAGCTTCCCGCGGAGCCGCCTTCCTTCACGGAGCCTCAAGAGCATAGATACACCTTGAGGACTTCCCCTCGCCGCACTTCCTGTGTTAGTGGGCCAAGATGCAGCTCCCCCAAGCCTGGTTCCCCCCACGCGGATAACGGATTACTGAAGGAGGAGGTTGCGGTGGTTCCTCTTGACTTGGATGACTCGGCCTGCCATAAAGAACCTCCGACTGACAGGCCGAGTCTTGTTAGCGAGGCAGACAGCGAACTCTCTGAACACATAGGGGCCAAGGTCAGTGAAGATACTGGCCTGTTGGATAGTAGAGGTTCCAGATCCACCAAAGAGCCATCAGTCGGGCAGGCCGAGGAGGAAGAGGTGGAGGAGGACGATCCTGATGTCTACTATTTCGAATCTGATCACTTGGCTCTCAAACACAACAAAGACTATCAGAGACTGCTCCAGACCATCGGCGTATTGGAGGCCCAGAGAAATCGGGCCATCCTGGATCTGGAGGCACTGACTCGCCACCAGAAGCAGGCCCTGGCCAACCCCATTGCCTTCGTGGACCAGCTTCAGAAACAGgTGGAGTTGGGCTTGCCCTGTCCGCAGAGAGTCGTCCAGCTCCCCGAAATCGCATGGGACCAATACACCTCAGGCCGCAGTGAATTCGAAAGGGACTTTTGTGACAAGAAGCGCAAGACAAGGCGGTTGAAGTTAATCTTCGACAAAGTGGGCTTACCGGCAAGACCAAAAAGTCCGACCGATTCCAAGAAGGAGAGCGACGTCTCGGCTCTGTACTCGTCTCTGCCTTCCAGCGACGCCCCGGAACACGGCACGCTCGGAAACAGGACACAGatgatcAGAGGGAGACCGTATCACCAGAACAAACCAGACACGTTTAACCAGCTGTGGACGGTGGAGGAGCAGAAAAAGCTGGAGCAGCTTCTCCTCAAGTTCCCCCCTGAGGAGGTGGAGTCTAAACGATGGCAGAAGATCGCAGACGAGCTGGGGAACAGGACGGCCAAACAGGTCGCCAGTCGAGTGCAAAAGTATTTCATTAAACTGACAAAGGCGGGAATTCCAGTCCCAGGGCGAACTCCAAACCTGTGCATGTACAGCAAAAAGaccTCGAATAAGAGGCAGCACCacctgaacaagcacctgtacCGGCCGTCCACCTTCCTCACGTCCTACGAGCCGCCCGTCTACATGGAGGACGAGGACGAGCGCTCGAGCTTCATCAGCAGCCTGCAGGACGGCGCGGCCCACGATTCGGATGAGGATGGTGTCCCGGTGGAGCTGAGGCACCTGCCAGAGTACAAAGAGCTACAGGAGCTGAAAAGACTCAGGAAGCAGAAGATCCACGAGCTCCAGAGCGAGAGCACCCTCACACAGCACATAGGCTACaagTGTGATATGTGTGGCGTCGAGCCAATCCAGGGCGTGCGGTGGCACTGCCAGGACTGCCCGCAGGACAGTGCCGTCGACTTCTGCGCCAACTGCGCCGACTGTGCGTTTaagacggacacacacacgccgAGTCACCGCCTGGAGCCGGTCCAGCAGGCCGAGAGCTTCCTGGACAGAGACTACTGCCTGCCTGCGAGCGCCGCCTACAACTACCTGGACCCCAACTACTTCCCGGCCAACAGATGACAGGAGCGAGGCAGGGCCGCTCGAACCCGGGGCCGGACTCGCTTCGTCCACTCACCAGAGGCAGATCCGCTTACAGCAGGAGGACCCTGAACCACCGCTCTGCTCGAGCTCACACGCCATCTTCAACGCAAAAGGGAGGGAGCAACGTCCCAGATCGTCTCCACTCCCTTTCACCTAGCTGCTGTCAGgccttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagggtggaGATGAAAAGGGACTCGGTGCTGACTTTCCATTCACGCCAGGTTTTTAACCAGGAGGATTTGCTAACAAATCAGACGTTCTTAATTTACagaccctgaacacacacttttactagaagctgcttgtttttgtttttgttttttttttttccctcccttcTCACACGCCCAGACCTTACATCATGATGTCGAtcatgtttttgatcattttgatatatatatatattttttttatgttaaagcTCCAGCCCATGAAGCACTACAGCACGGAAAAGACCAGCTGAGAGACGCACTTGGTAGGTGTGAATAGCGTATGGGGTGtcgttttctttctctctctgtctttctctctcccgcTCTCCCTCTCATCCCTTCTTCTCGGTGTGTACTGTCGTCGATCATGTGAAGTATACAAACGTACGGTGAATCTAGCCAGTGGTAGGTGCTGTGCCATTTTTTGTTCTTCCATTCttccattcttcttctttttttttttttttttttttttttttttttttttttttttaaagcgtcCGGATGATTCCATGTCACTcgttttaggaaaaaaagaaaaagaaaggaaaaaaatgaaatggtggGAAAATCTGCCCAATCatcacacttcattttttttttccccccctgcCTCATggtccatgaaaaaaaaagtgtatttttattaatctatttaaaCGGCAATGATGCCAGAAAAGATGATATGGAGGTGGTGGCCGTCGTCGTCGCTGCAGCGCTCCACCCGTtgttattttatacacacagattTTGTTGTGCTTTCACGTAGACCATTTTGTATTGGATTTAGTTTTGTCCCtcccccctttctctctttttgccCTCCCTTCCCCTCCCTTCCCCTCCCCTGCTTCAATATCAGTGTATAACAGTCTGTTCTTAAATAATGTTCACATGTTAGAGGAGAACTGTGGAAATAAAAGTATGTGAAAAGTCTTTCTACACCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86819 lncRNA downstream 76959 29053597 ~ 29054227 (-) True G73248
TU86836 lncRNA downstream 87216 29043760 ~ 29043970 (-) True G73264
XR_004577953.1 lncRNA downstream 101995 29013240 ~ 29029191 (-) False LOC113540203
TU86820 lncRNA upstream 40666 29188158 ~ 29189340 (-) True G73249
TU86821 lncRNA upstream 41124 29188616 ~ 29189340 (-) False G73249
TU86892 lncRNA upstream 66061 29213553 ~ 29215051 (-) True G73318
TU86893 lncRNA upstream 68778 29216270 ~ 29218158 (-) True G73319
TU86901 lncRNA upstream 126097 29273589 ~ 29320334 (-) True G73327
XM_026936498.2 mRNA downstream 53750 29055012 ~ 29077436 (-) True pigk
XM_034303525.1 mRNA downstream 213034 28913679 ~ 28918152 (-) True LOC113540041
XM_034303523.1 mRNA downstream 213037 28911613 ~ 28918149 (-) False LOC113540041
XM_034303526.1 mRNA downstream 250984 28877573 ~ 28880202 (-) True LOC117597036
XM_034303527.1 mRNA downstream 254283 28873579 ~ 28876903 (-) False LOC117597037
XM_034303995.1 mRNA upstream 3029 29150521 ~ 29171921 (-) True usp33
XM_034304142.1 mRNA upstream 152814 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA upstream 152814 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA upstream 152814 29300306 ~ 29322917 (-) True dipk2aa
XM_026936180.2 mRNA upstream 185627 29333119 ~ 29336703 (-) True chst2a
XR_004577982.1 other downstream 246221 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 246221 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 249022 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 478761 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 894381 28236724 ~ 28236805 (-) True trnas-uga_2
TU86878 other upstream 1146 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 375902 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 376231 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 377017 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 377497 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile