RNA id: XM_034304055.1


Basic Information

Item Value
RNA id XM_034304055.1
length 2153
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC113540190
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28798977 ~ 28827964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaTGACCAATGCCTGAGTTAAACATGCCATAAGTAAATGAATGACAGCTCCACACGTGCATTAAAGGGTTAACACCCGTCCTGCTGTTTTTAACTCATCTCTTTGGAGAGAGCACGTGCTAGCTCGCCTGTGATTCAGGAGATGAGTGGGCGTGGCAAACCGAGCACGAGCGGCAGCGGCGTTGCCATGGCAACGTAAACAACCTGAGGCTGTTGAGAGCgcaggaggaaagagagagagagagagagagagagagagagagaaagaggaattTTTGGGGGGGATGTTAAAGAGGAAAGTGTTTACAGATTGTACAGAAATGGAGTTcacagcaaacacaacacaTAAAGATGGAGATGAAGGAAGCTTTACCAGAACCTCAATGCGGTTTCCACGGAGTCCTGAGATACAGAAGAGAGTCTGAATGGAGAAAAATCAATCTTCTGCCCGCGTCTGCTAGTGACCATACAGTGTGGTGTGAGTTTTGTGGTGCGAAAGCGAAGCCTCCACTTGATTTTTCGAAGATCCCGGATCCAGAGGATTTCTGCTGCGCTCAGTATATGGAGCTGTTTAAGAAGGTGGAGCAGCAGTGGCGCTCGCTGCAGGAGAACTCTGGTGAACCTTCACAGGAACACGACTCCAATGTGGAGAAAGTGCAGGAgcacagagacagagcaagacCTCAAGACGTATTGCAGCAGGTTGCAGAAGAATGTCTCAGAAAAGCTAAAAGGCCATCTTCAGAAAACCAAACCGAGATGCCGGGCTGCAAAGTGACGACTTCGGGTTTGTTCACCACCATCACGTTCCGGCTTTCTGAGTTTGTCCGCTTGAAAGAGAACGGGCGCTTGACTGCGAGGGAGGAGAGCATAAAAGAGGAAAAGCCCAGCCCGTCCAAGCTCTGCAGCACTAACGGTTCCGTTCCAGCTGGGTTCGGTCTGTGCCATTATCAGggCCACATACAGAAGTTTTACTCGAATGGGAATAAATTTCTCACAGCGCTTCCAGACGGCACTGCCCAAGTCTTCTATCCCTCAGGAAATTTGGCCATTATCGCTTTCATAGATGACGTAGAGGGAGTCTGCATCATTCTTGATGACATCAAATCAAGCTGTCCAATCAGAGCCTTCTTCCAGTCCGGTGGCATCTCCGCTTGTTACCATAGCAACGGGAGTACCTGGTTGCACATGGACGTGTGGGGAGGGCTGAGTTTAAATGAAGACAGGACCAGAAGAAGCAAGTGGAAATGGACGGACCAGGCAAACAATCCGACGCCCTTCAAACCCATCCACCTGTCACTCAATAAAAACATCGGGGTTAGAGTTCGGGGACGAGAGTCTGTCGTCGTGACCTTCCTGGCTTCGGGACAGCAGGCTCGCTTTAGCGTCGGCAGCTGCACAAAGccGAGCGACCCCGCTCCATCTCTGTGTAAAGAGGAGCTGATGATGCAGGTGAGCCAGCTCAACGCCCGGCTGGCGCTCGAACGCCTGCGCTGGTGCCTCGCGTTTCACTCGGACTCTAAGTGTCGGTCTCTCAGGCTCCCCCCAGTCCTCATCTCACAGGGACGGAGACTTCTGAAGCTCAGCTCCAGCATTTGGATGGAGGAGAAGGACAAGGCCTATATACAGCACTGCCTGCGGGACTGCGAGTGACCTCTGACTTCAGGATCAATACATACAGGTTTTAACTTGACTCCCGACTCCTAAAGAAGCAAATCAGCGAGTCTGTTCAAACTTGCAAATAAACTAAGCACAGTTAAGTTTTCTGTGTAAGGCTGTATGAAAATAAACTCTGCGtcttgctgttatagtaaaagaagtaacgatggggtggtgtgttaTAAGTTAACACAGtcaatgttcatgaaacaagttccttacattatagcagctaaaaacagtcattcttcatgtttgtcatgttaccgaaaaACAGGAAAGCGCAAatttctctgtcctgaagactttttgtAACGGAGGAAAGAGATACAACGCCAGAGATACAAATTAAACAGGTCTTCAAAGATCAGAGAGTATATCCAAAGAGAAGCAAACAGGGCAATGCAAGGGTCATACGCAAAAAAAGACAATCAAAACACAAAGGATCAGGACTTACCTGAGTGAACTcagttggcaagacttcgcaatgtgTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86322 lncRNA downstream 7148 28787623 ~ 28791829 (-) False LOC117597168
TU86345 lncRNA downstream 14837 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 81022 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 130334 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 327206 28397661 ~ 28471771 (-) True G72726
TU86430 lncRNA upstream 21718 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 81350 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 81350 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 81350 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA upstream 81350 28892016 ~ 28896799 (-) True LOC117597038
XM_034303991.1 mRNA downstream 7148 28787614 ~ 28791829 (-) True LOC117597168
XM_034303990.1 mRNA downstream 13222 28763304 ~ 28785755 (-) False ppm1la
XM_026936503.2 mRNA upstream 32256 28842922 ~ 28861443 (-) True gipc2
XM_034303527.1 mRNA upstream 62913 28873579 ~ 28876903 (-) False LOC117597037
XM_034303526.1 mRNA upstream 66907 28877573 ~ 28880202 (-) True LOC117597036
XM_034303523.1 mRNA upstream 100947 28911613 ~ 28918149 (-) False LOC113540041
XM_034303525.1 mRNA upstream 103013 28913679 ~ 28918152 (-) True LOC113540041
XR_004578096.1 other downstream 146552 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 562172 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 562710 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 757192 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1174169 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 62912 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 62914 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 71661 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 337972 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 712728 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile