Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936498.2 |
| length | 1454 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 12 |
| gene id | pigk |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 29055012 ~ 29077436 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0050976 | detection of mechanical stimulus involved in sensory perception of touch | biological_process |
| GO:0016255 | attachment of GPI anchor to protein | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0034394 | protein localization to cell surface | biological_process |
| GO:0042765 | GPI-anchor transamidase complex | cellular_component |
| GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
| GO:0003923 | GPI-anchor transamidase activity | molecular_function |
| id | description |
|---|---|
| K05290 | PIGK; GPI-anchor transamidase subunit K |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86819 | lncRNA | downstream | 785 | 29053597 ~ 29054227 (-) | True | G73248 |
| TU86836 | lncRNA | downstream | 11042 | 29043760 ~ 29043970 (-) | True | G73264 |
| XR_003404005.2 | lncRNA | downstream | 25821 | 28941049 ~ 29029191 (-) | False | LOC113540203 |
| XR_004577953.1 | lncRNA | downstream | 25821 | 29013240 ~ 29029191 (-) | False | LOC113540203 |
| XR_004577955.1 | lncRNA | downstream | 25821 | 29015014 ~ 29029191 (-) | True | LOC113540203 |
| TU86818 | lncRNA | upstream | 50619 | 29128055 ~ 29196167 (-) | True | G73247 |
| TU86820 | lncRNA | upstream | 110722 | 29188158 ~ 29189340 (-) | True | G73249 |
| TU86821 | lncRNA | upstream | 111180 | 29188616 ~ 29189340 (-) | False | G73249 |
| TU86892 | lncRNA | upstream | 136117 | 29213553 ~ 29215051 (-) | True | G73318 |
| TU86893 | lncRNA | upstream | 138834 | 29216270 ~ 29218158 (-) | True | G73319 |
| XM_034303525.1 | mRNA | downstream | 136860 | 28913679 ~ 28918152 (-) | True | LOC113540041 |
| XM_034303523.1 | mRNA | downstream | 136863 | 28911613 ~ 28918149 (-) | False | LOC113540041 |
| XM_034303526.1 | mRNA | downstream | 174810 | 28877573 ~ 28880202 (-) | True | LOC117597036 |
| XM_034303527.1 | mRNA | downstream | 178109 | 28873579 ~ 28876903 (-) | False | LOC117597037 |
| XM_026936503.2 | mRNA | downstream | 193569 | 28842922 ~ 28861443 (-) | True | gipc2 |
| XM_026936482.2 | mRNA | upstream | 53750 | 29131186 ~ 29147492 (-) | False | zzz3 |
| XM_026936483.2 | mRNA | upstream | 53750 | 29131186 ~ 29147359 (-) | True | zzz3 |
| XM_034303995.1 | mRNA | upstream | 73085 | 29150521 ~ 29171921 (-) | True | usp33 |
| XM_034304142.1 | mRNA | upstream | 222870 | 29300306 ~ 29322917 (-) | False | dipk2aa |
| XM_034304140.1 | mRNA | upstream | 222870 | 29300306 ~ 29322917 (-) | False | dipk2aa |
| XR_004577982.1 | other | downstream | 170047 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577983.1 | other | downstream | 170047 | 28882327 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577984.1 | other | downstream | 172848 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004578096.1 | other | downstream | 402587 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| trnas-uga_2 | other | downstream | 818207 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| TU86878 | other | upstream | 71202 | 29148638 ~ 29152381 (-) | False | usp33 |
| XR_003404076.1 | other | upstream | 445958 | 29523394 ~ 29523466 (-) | True | LOC113540702 |
| XR_003404072.2 | other | upstream | 446287 | 29523723 ~ 29523912 (-) | True | LOC113540698 |
| XR_003404071.2 | other | upstream | 447073 | 29524509 ~ 29524687 (-) | True | LOC113540697 |
| XR_003404077.1 | other | upstream | 447553 | 29524989 ~ 29525061 (-) | True | LOC113540703 |
