RNA id: XM_026936499.2


Basic Information

Item Value
RNA id XM_026936499.2
length 4865
RNA type mRNA
GC content 0.44
exon number 4
gene id ppm1la
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28763304 ~ 28785755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttgcagctgctCTCACAACTCTGGCATCATTCGCACCCTCTCCAAGCTCCAGAAACTGCGGTGCGTAAAAAGCGCATTTCATTTTCCAAGGACACGAGAATGGAAGCAGGGAATCGGAGCTCCTGAGGTCTTCATCCCTGCACGCGATCTTTACTTCTAGATCATGGAAGTAGTGAtctgaagcgtgtgtgtgtgtgtgttatgagtgAACAGTAAGCAGTGTGATGATAGGAGACGCGATGACGCTGCTGTCTCTTCTGGGTCGCATCATGCGTTATTTCTTGCTCCGGCCGGAGACCCTGTTCCTCCTGTGCATCAGCCTGGCCCTATGGAGCTACTTCTTCCACACGGACGAGGTGAAGACCATcgtcaggtccagcagggacgCCGTCAAGATGGTCAAGGGCAAAGTGGccgagatgatgatgatgcaggaCGTGAACGGCGGCGGCCTACACGTGATGGACGGGGAGTTCTCCAAGACGTGGGGCTTCAAGAGCCACAACGTGGCCGTGTACTCCATCCAGGGCCGCAGAGACCACATGGAGGACCGCTTCGAGGTGCTCACAGACCTCACCAACAGGAGCCATCCGTccatatttgccatttttgaCGGCCATGGTGGAGAGGCGGCTGCTGACTATGTGAAGGCTCACCTTCCCGAGGCTCTGAGGCAACACCTGCAGGCTTACGAGCGCGAGAAGAAGGACAGCCAACTGTCGTACGCCTCCATCCTGGAGCAGCGCATCCTCGCTGTAGACCGGGACATGGTGGAGAAGTTCTCCGCCTCACACGAGGAAGCGGGCACTACGTGTTTGGTGGCTCTGCTGTCTGATCGAGAGCTGACGGTGGCGAACGTGGGCGATTCACGCGGCGTGTTGTGCGATAAGGACGGTAACGCCGTGGCTTTATCTCACGACCACAAGCCCTATCAGCTGAAAGAGCGCAAGAGGATCAAACGcgcagGCGGCTTCATTAGTTTCAACGGCTCGTGGCGAGTGCAGGGCATCCTGGCCATGTCACGCTCGCTGGGCGACTACCCGCTGAAGAACCTCAATGTTGTGGTGCCCGACCCTGATGTGCTGACCTTCAACCTCGACAAACTACAGCCTGAGTTCATGATCCTGGCCTCGGACGGCCTGTGGGACGCGTTCAGCAATGAGGAGGCGGTGCGCTTTGTCCGAGAACGCCTCGACGAGCCGCACTTCGGAGCCAAGAGCATTGTGTTACAGTCATTCTACCGCGGCTGCCCCGATAACATCACTGTCATGGTGGTGAAGTTTAAAAGCACCAAAAACGGAgactagtgttttatttttcctttcgAACTTTTCTATACGAATATGAATCCACGCTTCCTAAGAATCTGATCGATTGTTTTTCCAACGTGCCAAATGGACGACCTTTTAAACGTTTCCATAATTTAACCCGACTGACATTTATCTGAAGGAGACGTGCCAATGAACTGGCAATTGACCATgcatctatttttttatttaatataaaaatatcaagtTCTGCCTGAACATATCATATGGGTCTCGATTAAATTACATGGATGCTGCCTGTGATCTGCTAACCCCCATGCTTGGGTTAAAACCAGTCCTGgtgattaaaatgaaatcaagaaAAACACTCTGCTTTTCCTATTTATTGGTCGAAACTGGTTTTGggaataattaatcatttaatcagtttatacACTCCGATTCAATCTAAAGCTCTGGCATGACTGCGTATTAAATAGAATAAACAGTtctgaatttatgaatttatgaagGTCGAGCCTTTTGCCGTTCCTGTTTCTTATTCTTGTGTCATCTTTCCTTTATTATGataaatactttttattcatgGAAATTTGgtaaaggataaaaaaaaacattcatgcaCAGGTATATACTGGGACAAAACTGCATACTTCCaggaacaaaataaagaaaatacatgACCCTTACCTTTACAGTTCCCTAAATTATGCGTATAAACAAAGTAACCAAAGTACTGGTtaattattttgcaaaaaataacTAAAGTGCACTGAAATTGCCAGACAACCTCAATACCTCTGAAATTAGATTTACTTTCACTGTGATTCTTATAGCAATACAGTCATATAAGGTATGTACTTGTCTTAAAGGAAGTGATGTCACACTAGCTCAGGCAATGACGTCTCCACACCAGCAGAGGGCCACCTCCGGTGAATTCTAACTGCCTACACAATGAgtcaattaaacaaacaaacagagaaaaagctggttgcaaaagtattcaccccctctgGGTCAAGACTTTGGCTGCAGTTAGAGCTGTAAGTCTTTTGGAGTATGTCTCTATATAATTTGCAcatctgaatgttttttcttaGCGAAATTGGTCATGCTCTGTCAGACCGGATGGTTTGTACACTATGGATTCATGAcatatttatgttcatgttgGTTCCAGGTTTCAGTAACACTACCACATGCGGAAAAGTCCAAAGGTTGGGGGAGAGATGTTGGGGTTGGtttgggggtgaatacttatgcaagacactgtatagccctgctttttttttattctcttgaGGTTTGGATTCAACTCATTAATTCAAGTGACCACTCACACAGGCTAATAACttgctttgtttgtttcaaGGACCCCGGAAGACCCCAGACCCGTGGCTGAACCTCTGGTCAACTTAAACCAGATGCAGGCATAATAGGAATAATTGCCTAGTAGTTACTCAGGAGAACTTATGGGTCTGTAAAAGGAAATATTAGCCAAACTACAGGGCTATAAAAAGTCTAAATAGTGCAAGGTAAGTAGTATAATGGATATTATAGCAGCTGAACCTTTAGGCTAAGCGTATGCAAATTAGTGCATCCGAATCCCTGAGCTTGTTGATTCACAAGTGTTTTCCTGGCAGTGGCGTTACTTCCATCATGGCCACGGTGTCAGATGAGTACTCTCAAAATAGCGCCTGTGTTGTAGATCCAAGTATTTGAACCATTCACAGCATTGACTCCTGTTACTTCAGCTCACAGAAAGTCCTCTCTTACTATCCGAGCTGTTACTGGAACTGACCACTATGATTAGTCCAGTCGTTAAAAGGGACCGGTAGAAAGCTGAGCACACACTCGGCTCTCGAGCATCAAAGACACCTCGGTTTTGTAAAACCGCCAGAAGGAGCTTGTTGAAGAATATGGGACAGTGTGGTCCAAAATCTTCCACTGATGAGCAAATGCTTTGTCTCGGATCAACAGGATTAATGTGTGAGAACTTAACCAGGTCCTTGAAAATGACCCCTGCCATTCGGGTCTTAGAAAACGGGATTTGTCTCATTTCACGGTTGAAGAGATGCTTGGGGGTCTCCAAGGACCAAAGAAAGCGTCGGCCGACCGGGAagagcaggagaagcagctgCAACTGTACAGCGCTTGTTTTCGTAGAGGACCTGGCTGGAGGAGTTTGGATGACGCCGGAGGAAAACAGAGGAAGAACctgagaaggaaaaaacagaCTTTGATTTCACCTTGAGGATATACACGGTGGCGACGATGGCTCTGTCGCTGGAGGCCTGAACGCTGGGAGAAGAAAATCATGAAGGGCTGGAATTACATGTTGCTAACAGACGTGTTAAATTCCAGTGAGAAgaagtaatttttcatttttctttttatttttagagaaaTTCCTTGATTTAGAACTGAAGTCTAGGAAAGTCTTGGACTAATGTCCAGCACCATTGGACATtaattccttccttccttcctttctttctttctttctttggaaTCTTGGGAAGTGATTGGTGGAACTTTTGCAGAAGTATGAGAATATGTTGGTATGCCAAATATGTTTATAGATGTAGATTATTATCCAACAAAACATTATATCTGAGGCAGGTACCATATAAATGAATCTTTTGGCCAAATTCTACAAAGGTTCTGTATGGGTGAAAgctaaagctgtgatttttatttattgattgattgatttttggAAAGAAAGTGCATTTGGATCACTTTTGGTCTGCAAACATTTAAACTTGAACCTGAACAAATTTGCGAAGTTTAATTTCTGAATCATATGTGATTTCACGCTAATGCTCTGCTGTTTGATTGATAAGTGTATGAATTAATGACATACAATAGAATTTGAGTGTTCGAATCACTCAAATTATTATCGGACCTCGATGCATGTTGACCGTAGGTCTTGCCGTATTTTGAAGTAtgtctgatttttattattacaagaTGGTCAGTGATTTACTAGGAGCTAGAAgggagaaacagaagaaaaaaaaaaaaatgttagccaagtttcccaaaagcatcataGCAGGGTTAAATGTCAGAACGAGCAACACATGCCATTAACACTCCCTATACCAGTGAAGATGATCTTGAaaatggttcctcaagggttcttagcttctttGAAGGGGTTTGACATGGAACCTGTTGATAACAatggttctacataaaacctttgGATCTAAAGGAATGAACCAAAGAACCATTCAGGGTTCTAGGTTTAAATTTATAAGAAACAAAGTTGGGAAACTTAAGctggttatgtttaatgttgtatctactgtcagagctgctgttatggaaaatgaatcatcaccgtctgaccaatcagatttaagaattcaggTATAATGGAGTTTGTACAATGATACGATAATACTGTAGAGAGTTCTGCGCTAGCcgtttaacatttaacatttctagGCTTCCTGTGAGAGTCACCATCATACTTTGACCCCTTTGCCTTATCATAAAGCTCTGAAATGAGATAAGTGAGCAAGGACATGTGTAATAGATCaaccagtgagagagagagagagagagagagagagaga

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577998.1 lncRNA downstream 45349 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 94661 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 291533 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 379844 28343134 ~ 28383460 (-) True G72709
TU86345 lncRNA upstream 9163 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 13863 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 58624 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 118256 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 118256 28892016 ~ 28896799 (-) False LOC117597038
XM_026936110.2 mRNA downstream 27 28762094 ~ 28763277 (-) True arl14
XM_034303988.1 mRNA downstream 6660 28745630 ~ 28756644 (-) True LOC113540626
XM_034303624.1 mRNA downstream 26551 28722850 ~ 28736753 (-) True si:ch73-182a11.2
XM_034303625.1 mRNA downstream 26551 28725820 ~ 28736753 (-) False si:ch73-182a11.2
XM_034303626.1 mRNA downstream 52215 28708029 ~ 28711089 (-) False prdx1
XM_034303991.1 mRNA upstream 13854 28787614 ~ 28791829 (-) True LOC117597168
XM_026936493.2 mRNA upstream 25217 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA upstream 25217 28798977 ~ 28812304 (-) False LOC113540190
XM_026936495.2 mRNA upstream 25217 28798977 ~ 28812304 (-) False LOC113540190
XM_026936497.2 mRNA upstream 25217 28798977 ~ 28812304 (-) False LOC113540190
XR_004578096.1 other downstream 110879 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 526499 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 527037 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 721519 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1138496 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 99818 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 99820 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 108567 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 374878 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 749634 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile