RNA id: XM_026936503.2


Basic Information

Item Value
RNA id XM_026936503.2
length 2685
RNA type mRNA
GC content 0.47
exon number 6
gene id gipc2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28842922 ~ 28861443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTTCTGTGTGACGTAGGCGCGCCTCTGTGCGTGgctgtgtgtgcgcatgcgcactcGGCGCTGTTGAAGCCTTGGCGTTGGTCGCGCGCTGCCGGTCAGAGTTTATGGAAAAACGAGGAAACGcgctgtttgtttatttgtcgCTTTAGTGGTGAGATTTTCACTTCCTGTGCGAGGAAACGTTTctgttttcaaacaaaaaaaaagtgactctgAGCGCTACAGGTTGTTTACTCTCATGCTGTAGAGAGGCTCGCGCTTTGCGTACCTGTCGCGCGGATTTGTTTGTCCCCCTCCACCCTCCGGTTCCCCGGTGAGGAGCACGCGATGCCGTTGGGCCTgcggaagaagaagaagtcgcGAGAGAGCTCGAGCCTGGTGGAGAATGAGGAGGtcagtggaggaggtggaggtggaggaggaagcGGCGGAGGGCACGCGGGAAAGAGCGCGGCGATGAACGgaggcggcggcggcggcggagGGCTCGCGCCACCACCCGCAAACCTGCGCCCCAAACTCGTGTTCCACACGCAGCTCGCGCACGGCAGCCCCACCGGCCGCATCGAGGGCTTCAGCAACGTCAAAGAGCTGTACGCCAAAATCGCCGAGGCGTTCAATCTCAGCTCGTCTGAGATCCTGTTCtgcaccctgaacacacacaaaatcgaCATGGAGAAGCTGCTCGGAGGCCAGATAGGTCTAGAGGACTTCATCTTCGCTCATGTGAAGGGCATCAAAAAGGAGGTGGAGGTGTTCAAGGCCGAGGATGCGCTGGGCCTCACCATCACAGACAACGGCGCTGGATACGCCTTCATCAAGcgcaTAAAGGAGGGCAGCGTGGCAGACGGCGTGAAGGTGATCTGTGTAGGCGACCACATCGAGTGTATTAACGGGAAGAACATCGTGGGGACGCGGCACTATGAAGTGGCCCGCATGCTCAAGGATCTGCCGAAAGATCAGTCCTTTAAGCTCAAGCTGGTCGAACCTATGAAGGCTTTTGagaTGCTCGAGCCGAGATCAAAAGGAGCCAAGCCTCAGGGGGAGAACCGGATCGGCACGGGCCGAGAGACTCTGAGACTCCGCTCCAAAGGCCCAGCCACTGTCGAGGAAATGCCCACCGAGTTTGAAGAGAAGGCGGTGAAAAAAGTGGACGACCTCCTTGAGAGCTACATGGGTATTCGAGACACGGAATTAGCGGCCACGATGGTGGAGGTCGGACGGGACAAGGTGAACCCGGACGAGTTTGCCATGGCTCTGGACGAGGCTCTGGGAGACTTTGCCTTCCCAGACGAGTTCGTGTTTGACGTCTGGGGAGCTATAGGTGACGCCAAGCAGGGACGCTTTTAACTCCAATACAACACGTATACACACTCCGTGACAACTCAGCAATATGACTTGGGATAATGTTTAGTTAAAACAGCATGTGGTAGGTAAAAGGAAATGCTGTTTGATATCACTGTGATCTtagaacgaacacacacacacacacacacacactacagctcaATCAATCAAAGTGTACTTATTCCACTGGATAGCATTAAATACAACTTTTGTATCAGGTACATTTTAAATATCGATATTGTCTCCTGTTTGATTGGACACTAACGTCATTGTTTATTGTGTCACTGTGAGGACGCACACTTTTCTGTAGGGCAGAGACAAGAATCGCAGCATTTGGAACACATCCGTCCACATATCTCGGCAATCTTAAGGATCACTAATAGAATTTTATTAGAATAAAATTAACTTGCGCTTTAATTTGCTAATGTTTCACGTCGTGACTGTAACTTGTAAGGCTGATTTGTTACCGTTGTGTAACATCATTCACAACTCGCTTTACATCACTGTTGTTTTGCGTCATCGAAATTATTTCACAAGTTCATCACCGCGGCCTACAACAGGAAATGAGCTCAGTAGAATATAATTCTATATGTGACCATAGTGATAGGCCTGATTTTTTCCTCCCCATCAGTAGGTATCTGATGTTCACTAGTAAGCTCACTAATACAAGGTGAATTATTGTATAACTGGCTGATCACATTTAATCTGCACTTGATCCATGGACTCGTCCCTCAGCAAAATCAGGACATGTGCCATAGTCACATGATTTGCCATGAATTAGTGATTAAGGGCActttaaaatcactttttttttttataactgtcTAAACTGTAGTGCTTattaggcatgtgctgatacTGATACAAATCGGTATATTTAGCTTACACTATATTATGACAGACCACTTGTTTTGTATTCTCAAAAAGGCTACCTAAGTAGGCAGCATTTGTGCTCCTGAGACGGAACGTcattatttttgtctcatttgtacTTCCTCTAATTCTGTTTACTCAGAGTTGCAAAAACATTACACAACCGTGTCGCAATATGCACGTGTTGTGATAGATAAATTTATGTATCAGCACACGCctagtcatttttaaattgtgttttgtaTATAACTAACACTGaaaattttgttttgtgaaagaaTTTCAGATTCTGCATTTCTTCAGTTTGGCCCAATGAAGGATTACACGAATCCGTCTTGATCatgttataatatatttatcACTGCGCATGGAAAGATGTTATAGTAACTTTAGACAAGGGTGATTTTTGGAAACTAACctaacctctttttttttttttgtacagaatATGAATATTTAGTA

Function

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86430 lncRNA downstream 9202 28832384 ~ 28833720 (-) True G72893
TU86322 lncRNA downstream 51093 28787623 ~ 28791829 (-) False LOC117597168
TU86345 lncRNA downstream 58782 28782923 ~ 28784140 (-) True G72824
XR_004577998.1 lncRNA downstream 124967 28713034 ~ 28717955 (-) True LOC117597077
TU86306 lncRNA downstream 174279 28667323 ~ 28668643 (-) True G72796
XR_004577988.1 lncRNA upstream 30573 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA upstream 30573 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA upstream 30573 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA upstream 30573 28892016 ~ 28896799 (-) True LOC117597038
TU86785 lncRNA upstream 79219 28940662 ~ 29029187 (-) False LOC113540203
XM_026936493.2 mRNA downstream 14958 28798977 ~ 28827964 (-) False LOC113540190
XM_026936494.2 mRNA downstream 30618 28798977 ~ 28812304 (-) False LOC113540190
XM_026936495.2 mRNA downstream 30618 28798977 ~ 28812304 (-) False LOC113540190
XM_026936497.2 mRNA downstream 30618 28798977 ~ 28812304 (-) False LOC113540190
XM_034304055.1 mRNA downstream 32256 28798977 ~ 28810666 (-) True LOC113540190
XM_034303527.1 mRNA upstream 12136 28873579 ~ 28876903 (-) False LOC117597037
XM_034303526.1 mRNA upstream 16130 28877573 ~ 28880202 (-) True LOC117597036
XM_034303523.1 mRNA upstream 50170 28911613 ~ 28918149 (-) False LOC113540041
XM_034303525.1 mRNA upstream 52236 28913679 ~ 28918152 (-) True LOC113540041
XM_026936498.2 mRNA upstream 193569 29055012 ~ 29077436 (-) True pigk
XR_004578096.1 other downstream 190497 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 606117 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 606655 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 801137 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1218114 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 12135 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 12137 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 20884 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 287195 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 661951 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile