RNA id: XM_026936535.2


Basic Information

Item Value
RNA id XM_026936535.2
length 2924
RNA type mRNA
GC content 0.53
exon number 27
gene id dpp6b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27704281 ~ 27839097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAACCAAGCGCTCAAGCGTGATCCCACGCGCAGTTTTCCATTTCGGCTCGAGACGGTGCCTCCATGACTTCGGCTAAGGAGCGCAGCGCTTCGGCTAAACCGCCTCAGCACCAGGACCAGgaGCTGGTGGGTAGCGCTCCTCCTCAGAGGAACTGGAAGGGAATAGCCATCGCTCTGCTGGTCATCCTGTTCATCTGCTCTCTGATCATCACCGCCGTTATCCTGCTGACGCCACGTGAGGATGACAGCTTGGCCTCCAAGAAGAAAGTCACAGTGGAGGATCTGTTCAGCTCAGAGCTGCAGGTTCACGACCCACAGGCCAATTGGCTCAGCGACACGGAGCTGCTGTACCGTAATCAGGAAGGAGATGTGGTCAAGCTTGATGTGGAGAGCAACATGACTGAGGTTCTGGTGAAGAACAAGATGTTTGAAACGTATAAAGCCAGCAAGTACCAAGTGTCTCCTGACCTGACTCACATTCTGCTGGCCTACGACATTGTCCCGCTGTACCGGTACTCCTACACGGCCTCCTACATCATATGCAGCCTGAAAACTCCGGAGTCGGTGCTTTTGTCGCCTCCTGAAGTGCAGAACACTACGCTGCAGTTTGCTGGATGGGGTCCGAAAGGCCAACAgctgATCTTCATCTTCGAGAACAACATCTACTACCAAGCCACTGTGAAGGACAAACCCATCCGCCTGGTCACTACAGGACGAGAGGGCGTGGTCTTTAACGGACTCACCGACTGGCTCTACGAAGAGGAGATCTTCAGGTCTCACACCGCACACTGGTGGTCCCCGGATGGCCTCAGGCTTGCGTACGCCACCATCAACGACACTCTAGTGCCCAAGATGGAGATCCCCATGTTCACGGGCAGCCTGTACCCCAGCACTCAGGAGTACCGCTACCCAAAAGCTGGAGAAGAGAATCCTGAGATCTACGTGTCGGTGGTGAGTCTGAATGGGCCGCTACACACAGTCCGGATGAAGAAGCCCGAGGACCCCAGGATCGGGAAGGAGTATTACATCACCATGGTGAAGTGGGCCACCAGCACCAAACTGGCAGTCAACTGGCTGAACCGAGCCCAGAACAACTCCATCCTCACCCTGTGCGAAGCCACCACTGGAATCTGCACCAAGAAACACGAGGACGAGAGCGAGAGCTGGCTGCACAGACAGAATGAAGCTCCGCTGTTCTCCAGAGACGGCCTCAGGTTCTTCTTCACCCGCGCAGTACCACAGGGGGGTCGAGGGAAGTTCTACCACATCTCCATGTCCACCTCAcagcccAACAGTAGCTCAGACACGCTGCAGTCGCTGACGTCAGGTGATTGGGACGTTACAGAGATTTTAGCGTACGATGAGGACACACAGCTGGTATATTTCCTGAGCACAGAAGACAATCCCAAACGACGACACCTGTACAGtGCTTACACCACAGGCTCGTTTAACCGCCGCTGTCTGTCCTGTGAGTTCAGCTGCGGCTTCGTCAGCGGATCCTTCAGCCCCGATGCAAACTACTTCCTCCTCAACTGTAAAGGTCCCACAGTGCCATACACGGCCGTCTACAGCACCCAAGACAGACTCTATCAGAAGCTGCTGGACGTGGAGATGAACGACTTGCTGAACTCCACCATCAGCTCCATGCAGATGCCCAGAGTGGAGTATCAGGAAATCACCATCGATGATTACACTCTGACCATCCAGATCCTGAAACCTGCAGCGTTCACAGACACGGCACATTACCCCTTACTGCTGCTGGTcGATGGCACCCCCGGTGGTCAGATGGTGACGGAGCAGTTCCAGGTGGACTGGGCGACGGTGTTGGTGAGCTCCTACAGCACCATCGTGATGCGTTTTGATGGGCGGGGCAGCGGGTTTCAGGGCACCAACCTGCTGCACCGGATCAAGAGGAAACTCGGAGAGTTCGAGGAGATCGACCAGCTGGAGGcgctcagCATCATAACTAAAGAGTCGTACATCGACAAGTCCAGGATCGGAGTGTACGGACGGGTGTACGGTGGATATCTCGCCAGCCTCCTGCTGAGCTCTGAGGACTCGCTGTTTAAGTacaactttaaatttaaatgtggaGCAGCCGTCTCGCCCATCACCGATTTCAGCCTATACGCCTCAGCGTTCTCCGAGCGTTATTTAGGATCTCCTCGATCCAATGCAAGAGTCTACGAGATGTCGAGTTTAGCTCATCGAGCAGGTCAGCTAGAGGAtaagaattttttaattattcaccCGACAGCCGACGAAAACGTCCACTTCCAGCACACGGCTAAATTTATCAactatttaataaacaaaaaggcCAATTACACACTGCAGATCTACCCTGACGAGGGGCACTTCCTGCACTCCGAGGTCTCTCGGCAGCACCTGGATCAGTCGCTCGTCAGCTTCTTCGAGGTGTGCTTCAGGCCGCTGGAGACAGTCACCGAGGAAGAGCTGGAACAGGAGGACGAGGACGACGGCTAAAACGGCGCCGGGAAATCCCACAACACAAACTGTGATCAAATTTGtttctctaaaaaaataaaatgtgcatcATGTAAtacttcttcatcatcatcttcatcatcatctctgtttGGGATGGAGCATCTGCATGGACCAATCGCACCTCGCCTCTGAAAACGGAACGGTCTGACGGAGGGACGAGCGAGCGAGCGAGTTTCTTCCTCACCTTCCTCCCTGATGAAGCTGTACAGCGCCCTCGTGTGGACTGAGCCGGTGGTGACGCAGCTGTGCGCTGAGAATGGAAACTGTGGAGGATAAATATAGCACAACACACTGTAGAGCAGTGCAGGAGAAATAGACATTCAGTAGCACTCTGCTAATATCCTTTGTTAGTTACGGAGCTTACCGTATTTTCCAGACGCCGATGGTTAGCGctacaagttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85461 lncRNA downstream 226615 27474765 ~ 27477666 (-) True tsen15
TU85454 lncRNA downstream 259167 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 297462 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 301646 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 417583 27286239 ~ 27286698 (-) True G71955
TU85956 lncRNA upstream 103668 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA upstream 118643 27894513 ~ 27970795 (-) False G72517
TU86050 lncRNA upstream 137000 27912870 ~ 27958488 (-) True G72607
TU86051 lncRNA upstream 198600 27974470 ~ 27980336 (-) True LOC117597146
XR_004578040.1 lncRNA upstream 201208 27977078 ~ 27985856 (-) False LOC117597146
XM_026937187.2 mRNA downstream 85090 27585574 ~ 27619191 (-) True gpr158b
XM_034303959.1 mRNA downstream 148294 27547823 ~ 27555987 (-) True pcyt1aa
XM_026937162.2 mRNA downstream 148295 27547823 ~ 27555986 (-) False pcyt1aa
XM_026936170.2 mRNA downstream 173191 27521690 ~ 27531090 (-) True anxa13l
XM_026936467.2 mRNA downstream 210044 27484777 ~ 27494237 (-) True acbd5b
XM_026937119.2 mRNA upstream 240194 28016064 ~ 28041785 (-) False prkag2b
XM_026937117.2 mRNA upstream 240194 28016064 ~ 28041785 (-) False prkag2b
XM_034304035.1 mRNA upstream 240194 28016064 ~ 28029051 (-) True prkag2b
XM_026935893.2 mRNA upstream 280842 28056712 ~ 28064529 (-) True cpdp
XM_026936704.2 mRNA upstream 299746 28075616 ~ 28093936 (-) True tsc22d2
trnat-ugu_9 other downstream 79473 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 83153 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 148295 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 271603 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 308058 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404039.2 other upstream 240194 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 460316 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 460854 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 872454 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 1097708 28873578 ~ 28882164 (-) True LOC117597037

Expression Profile