RNA id: XM_026936572.2


Basic Information

Item Value
RNA id XM_026936572.2
length 1562
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC113540232
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28619816 ~ 28628143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaagacAAGTCACCGTGAGCTCCTAGTATTTTCTCTTGCTTCACACTGACACATTGCGCCTGTGCTATAAAATATCTACATCCTTCCAAATTTACGCATTTTAACTTTGAACTTTCgCCGCTCTCCAAGCGATATGGCCAGCAACGTCACCAATAAGACGGACCCTCGTTCTCTGAACTCGCGCGTCTTCATTGGGAACCTGAACACCATGCTGGTGACCAAAGCCGACGTGGAGGCCATCTTCAGCAAGTACGGCATGATCGTGGGCTGCTCCGTCCACAAAGGTTACGCTTTCGTCCAGTACTCGAACGAGAGGAACGCTCGAGCCGCCGTGGCCGGAGAGGACGGACGCATGATTGTCGGACAAGTCCTGGACATCAACCTGGCAGGCGAGCCCAAACCTCACCGATCGAAAACCACCAAACGTCCAGCAGGAGATATGTACAGCAGCTCCACGTTTGAGCTCGACTACGATTTCCAGAGAGATTACTACGACAGGATGTACGCGTACCCGTCCCGCGtgccacctcctcctccacccctCTCTCGGGCCGTCATTCCCTCCAAGCGAGCGCGGGTCAGTCTGAGCGGAGGAGGAAGCCGACGCACCAAATCCagcttctcctcttcctccaaaAGCAGCCAGCGCTCTTCATCACGGGCCATTAAAGCAGACGATCTTCAGACCATAAAGAGGGAACTGGCTCAGATCAAACACAAAGTGGATTATCTTCTGGAAAGTTTAGAGCGCATGGAGAAAGATCACAGCAAGAAATCAGAAGGGAAGGTGGTGAAGGCGGAGGTGGGTGAAGTCTCTCAGCAGCACTCGAGCAGTAAgaaggagcgagagagagaggagcaggagATCAACGActctgaagaagaaggagatctgctggaggaagaggaggagGCGAAGAGCATCGGCGGAGAGAACGAGGAAGAGGacggagaggaggaggaagagggagagcACGAGGAAGGCGAGGACGACGGCGACAGCGTAAACGGCGACGACCCATAGACTGTGTTTatcttatttttctctctcacacacacaaacacctcagCATCCAGAGTGAAGAAACGTCAAAGTCTGGACTTCttcttacattaaaaaaaaaaaaaagataaggaaCACAAAGAATgtagatgaacacacacacacacacacacacacacacacacacacttttcttgtGAAGCAATTTTTAAAGTCTGTCCGAATAAACAATCAGTGCTGTGTTACTATTACACTTTTAAAcccattttaaatgtttcattttttcccccaatgtgccatttttctctttttgtttgttcccccaatcagcaggtgtgtgtgtgtgtgtgtgtgtgtaacagttctttttttcctcaaacagcTCCCGAGTGTAACCGTtctctcttaaaaaaataagataatcAACTCcattagaggtttttttttgtttggttggtttccCCTCATGTACGTTCATCTCTACATGTCCTTTTTTTATATCAGTCTTGTTCAAGATAAAAATCACTGTATGAATTTCAATAAAATGGTCAAAATATT

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86223 lncRNA downstream 148045 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 236356 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 240684 28365657 ~ 28379132 (-) True G72720
TU86171 lncRNA downstream 420007 28197991 ~ 28199809 (-) False LOC117597043
TU86306 lncRNA upstream 39180 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 84891 28713034 ~ 28717955 (-) True LOC117597077
TU86345 lncRNA upstream 154780 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 159480 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 204241 28832384 ~ 28833720 (-) True G72893
XM_026936574.2 mRNA downstream 704 28611191 ~ 28619112 (-) True LOC113540234
XM_034303284.1 mRNA downstream 14573 28574908 ~ 28605243 (-) True lmbr1
XM_034303285.1 mRNA downstream 14574 28574908 ~ 28605242 (-) False lmbr1
XM_026936156.2 mRNA downstream 127969 28476431 ~ 28491847 (-) True shha
XM_034304138.1 mRNA downstream 333158 28276696 ~ 28286658 (-) True ro60
XM_034304008.1 mRNA upstream 4611 28632754 ~ 28642395 (-) True dcaf8
XM_034304007.1 mRNA upstream 4611 28632754 ~ 28642394 (-) False dcaf8
XM_026936934.2 mRNA upstream 20181 28648324 ~ 28652425 (-) True LOC113540437
XM_034304106.1 mRNA upstream 40836 28668979 ~ 28680704 (-) True scp2a
XM_026937186.2 mRNA upstream 54329 28682472 ~ 28685576 (-) True czib
trnas-uga_2 other downstream 383011 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 383549 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 578031 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 995008 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 998688 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578096.1 other upstream 20181 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 245435 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 245437 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 254184 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 520495 29148638 ~ 29152381 (-) False usp33

Expression Profile