Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936574.2 |
| length | 1248 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | LOC113540234 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28611191 ~ 28619112 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0007254 | JNK cascade | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K09377 | CSRP; cysteine and glycine-rich protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86223 | lncRNA | downstream | 139420 | 28397661 ~ 28471771 (-) | True | G72726 |
| TU86202 | lncRNA | downstream | 227731 | 28343134 ~ 28383460 (-) | True | G72709 |
| TU86215 | lncRNA | downstream | 232059 | 28365657 ~ 28379132 (-) | True | G72720 |
| TU86171 | lncRNA | downstream | 411382 | 28197991 ~ 28199809 (-) | False | LOC117597043 |
| TU86306 | lncRNA | upstream | 48211 | 28667323 ~ 28668643 (-) | True | G72796 |
| XR_004577998.1 | lncRNA | upstream | 93922 | 28713034 ~ 28717955 (-) | True | LOC117597077 |
| TU86345 | lncRNA | upstream | 163811 | 28782923 ~ 28784140 (-) | True | G72824 |
| TU86322 | lncRNA | upstream | 168511 | 28787623 ~ 28791829 (-) | False | LOC117597168 |
| TU86430 | lncRNA | upstream | 213272 | 28832384 ~ 28833720 (-) | True | G72893 |
| XM_034303284.1 | mRNA | downstream | 5948 | 28574908 ~ 28605243 (-) | True | lmbr1 |
| XM_034303285.1 | mRNA | downstream | 5949 | 28574908 ~ 28605242 (-) | False | lmbr1 |
| XM_026936156.2 | mRNA | downstream | 119344 | 28476431 ~ 28491847 (-) | True | shha |
| XM_034304138.1 | mRNA | downstream | 324533 | 28276696 ~ 28286658 (-) | True | ro60 |
| XM_034303645.1 | mRNA | downstream | 335876 | 28238896 ~ 28275315 (-) | True | cdc73 |
| XM_026936572.2 | mRNA | upstream | 704 | 28619816 ~ 28628143 (-) | False | LOC113540232 |
| XM_026936569.2 | mRNA | upstream | 704 | 28619816 ~ 28628143 (-) | True | LOC113540232 |
| XM_026936570.2 | mRNA | upstream | 704 | 28619816 ~ 28628073 (-) | False | LOC113540232 |
| XM_034304008.1 | mRNA | upstream | 13642 | 28632754 ~ 28642395 (-) | True | dcaf8 |
| XM_034304007.1 | mRNA | upstream | 13642 | 28632754 ~ 28642394 (-) | False | dcaf8 |
| trnas-uga_2 | other | downstream | 374386 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| trnas-uga_1 | other | downstream | 374924 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
| XR_003404039.2 | other | downstream | 569406 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnat-ugu_9 | other | downstream | 986383 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| trnat-ugu_7 | other | downstream | 990063 | 27621056 ~ 27621128 (-) | True | trnat-ugu_7 |
| XR_004578096.1 | other | upstream | 29212 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| XR_004577984.1 | other | upstream | 254466 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004577982.1 | other | upstream | 254468 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577983.1 | other | upstream | 263215 | 28882327 ~ 28884965 (-) | False | LOC117597037 |
| TU86878 | other | upstream | 529526 | 29148638 ~ 29152381 (-) | False | usp33 |
