RNA id: XM_034303908.1


Basic Information

Item Value
RNA id XM_034303908.1
length 8105
RNA type mRNA
GC content 0.52
exon number 46
gene id scrib
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22377687 ~ 22468044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAATGCGGGTGGGGAAGAATGACGCCGTGAGGACTCTGTGTAGTCAAGAGACGGTGAGGCGTAGTTGGGGAATGGATGTGTAAACGTGAAGCTCCGGTTGACTCAGTACCTTAAGACTTGGCTACAGAAGCTGGAAACTCCCTGGCGCATGAGCACGACCAGAGGCGCAGCTAGCGAAATTAACTGTAGCCATATGAGTCACGACGAAACAGATATTGTGTGCTGTGGTTGCTTGCGGACGCGGCTGGGACTTTGCTGGGCGCAGCGGAGAGGCACAAAGCCGGCGGAGGCTGAAGAAGCGCTGCCTTACGGCTGACTCGAACTGCACTGTTTGTGCTCCTGCCTCAGCCTCTGCCAGACAAACACAACATTTTACTGTCTACTGCTTTTAATACTATTATAGAGTCGCCTTCTTTTATCACACAGTTAGCATTGTTTTAGGTGACTAGCTAACCGTGAACGTTTTTAAACCTCTGGCTAGCAACCGAGCTAGCCTGATAGACTAGcctcacaacaacaacaacagcagcagccgCGGCTCCTCGCTGCTACATCACATGCACCTGGGAAAGAAGACTCCATTAAAACCGAAAGAAggattttaaaagaaaccatAGTTGTAGCTGTCGCTGAAATAAAGCAGAACCTTTTGGGAGAGCTCAGTTTCGGTCTCGAAAAAGCATAGTCGCGTTTAGTTAGCAGTTAGCTGAGCAGTGTTGTTTGAAAACAGAGATGTGAGTGAACTCGGAGCAAACTTCTAAAATGAACCAGGGTTGAATTTCTCAAAGGAAGACTCAAGCAGACGGTCTGGGTTTGGAGTGCATCAGTGGATCAGCGGAGTGTTAAAGCAAGTCTCTTGGACTGGAAGTGAAagctgtctgtgtctctctgccaGGGATTTCCACTGTCGTGTtcgcctgtttttttttctttccccctccGTGTCTAATGCGGAGGCCCTGATCAGCCCCGGCGGCCCGCCATGCTCAAGTGCATCCCTCTCTGGCGGTGTAACCGCCACGTTGAGTCGGTGGATAAGCGGCACTGCTCTCTGCACACTGTGCCCGATGAGATCTACCGCTACACCCGCAGCCTGGAGGAGCTCCTGCTCGATGCCAACCAGCTCCGAGAACTGCCCAAGCCCTTCTTCAGGCTACTGAACCTGCGCAAGCTAGGCCTGAGTGACAATGAGATCCAGAGACTTCCCCCTGAGGTGGCCAACTTCATGCAGCTGGTGGAGCTGGACATCTCTCGAAATGACATTCCTGAGATCCCCGAGACCATTAAGTTCTGCAAGGCGTTGGAGATTGCGGACTTCAGTGGAAACCCCCTCTCCAGaTTACCTGATGGCTTTACACAGCTTAGAGCACTAGCCCACCTTGCACTCAATGACGTGTCACTACAATCACTACCGAATGATATTGGAAACTTGGCTAACCTGGTAACCCTGGAGCTGAGGGAGAATCTACTGAAGTCTTTACCCACctctctgtctttcctgGTTAAACTGGAACAGCTAGATTTGGGCAGCAATCAACTGGAAGTATTGCCGGACGCACTGGGGGCGCTGCCCAACCTCCGTGAGCTGTGGTTGGACAGGAACCAACTTTCTTCACTCCCCCCAGAGCTGGGAAGTTTGCGGAGATTGGTGTGTCTGGATGTGTCAGAGAACCGGCTCACAGAGTTGCCGTCCGAGATCAGTGGCCTCATCGCCCTCACTGACCTGCTGCTCTCACAGAACCACCTGGATGCCGTGCCTGACAGCATCGGCTCCTTGAAGCAATTATCTATCTTCAAAGTGGACCAGAACCGCCTGGTGCGTCTAACAGATTCAATCGGCGAATGTGAGAACCTCACAGAGCTGATGCTGACAGAGAATCTGCTGCAGTCTCTTCCAAGTTCTCTGGGAAAGTTAAAGAAGTTGACCAACCTGAATGTGGACCGTAACCGCTTGAGCAGCGTACCAGCTGAATTGGGTGGCTGTGCCAGTCTCAGTGTGCTCTCGCTCAGAGACAACCGCGTGGACAAGCTGCCTGCTGAGCTCGCGAATGCCACAGAGCTACATGTGCTGGATGTGGCAGGCAACAGgcTGCAGAACCTACCGTTCTCGCTAGCCAATCTGAACCTCAAGGCCATGTGGCTGGCAGAAAACCAGTCCCAACCCATGCTCAAGTTTCAGACTGAGGATGACGAGCAGACGGGAGAGAAGGTCCTCACCTGCTACCTGCTGCCCCAACAGCCTACACCCAGCTTAGaGAACCTGCTGCAGAGCAGCGTGGACGAAAGTTGGCCCACAGACACTAATCTGAACAGAGTGTCCGTCATCCAGTTCCAGGACCAAACCAAGgctgatgaggaagatgatgagaCTGCAGCAGAGAGGAGGCAGGGCCTGCAGAGGCGAGCCACCCCTCATCCCAGCGAGCTGAAAGTGATGAAGAATGTGATCGAGGCCAGAAGAAACGAGGCTTACACAGCTAAGCCAGATGAAGACCTGGACTCCCCAGACACTgatGAGAAACGTATGAGTGGATTGTCCAATCAGAGCCACGACTCCCAGGTCTCTAACAGCACTGCCTCAGCTACCTCTCATGATGAGACGCAAAAAGTAAATGGCATTGAGGTGGAGCTTAATGAAAGACATGATCACGAACAGGAAGACGAGGAAGAGGACGCAGAATACACTGAGCCTACTGTGCACTTTGCTGAGGAGCCCATTATCCGAGGcggtgatgaggatgatgaggatgaaaacgAGGACGACGAAGACGGCGAGCATAGCGACGACGAGGCTCGGTCAGCCCCCTTCCCTGCTGAGAAACAGCGCCTCATCCGCAAGGATACACCACACTACAAGAAGCACTTCAAGATCACCAAACTGCCCAAACCTGAAGCTGTAGCTGCGTTACTGGAGGGCTTCAGCCCTGACGCCCCCACATCAGTCCCCCGAATACCCAGCGAAGAGAAGGATGGGgagcaggaagaggaggaggatgaagagggaGCATCAGTTAACACCCCTCTGTTGCGGAGACTAGAGGCGGCTGAGCAAGAGGACAGCAGGCTGACTCAGGTGAACAGCTCGCTGCAGCCGGTGAAGGGGGTGTCATTTGATCAAGTCAATAATCTGCTGATTGAGCCTGCTCGAATTGAGGAGGAAGAGCTGGTCCTGAGCATCCTAAGACAAACTGGTGGATTAGGCATCAGTATAGCTGGGGGGAAAGGATCCACTCCTTACAAGGGAGATGATGAGgGTATCTTTATCTCCCGAGTGTCAGAAGATGGTCCAGCTGCACGAGCTGGGGTCAAAGTGGGAGACAAATTACTTGAGGTAAACGGGGTAGATCTGCAGGGAGCAGAGCACCACACGGCAGTGGAGGCCTTACGGAGCTCAGGAACGGCAGTGACCATGACTGTGCTTCGTGAGCGAATGGTAGAGCCTGAGAACCCTATCACCACTACACCCCTGAGACCCGAGGATGATTACTTCCCCCGGGAGAGGAGGTCCACTGGCCTTCCATTCAGCCTGGAGCCTGGATCCACTGCCGTTAGCACGGGCCCCTGCCAGCGCCTGGCCACCTGCTTAGTCCGCAACGACAAAGGCTTAGGCTTCAGCATCGCTGGGGGAAAAGGCTCCACACCGTATCGGACTGGAGACATGGGAATCTTCATCTCTCGCATTGCTGAAGGAGGTGCTGCTCACAGAGACAACATCCTTCACGTGGGAGACAGAGTCATATCTATCAATGGTGTAGACATGACAGAAGCCAGACATGACCAGGCAGTAGCGCTGCTTACCGGCACCTCCCCCACCATCTCGCTGCTAGTGGAGCGGGAACAAGCGAGCTCGGGCGGCTCCTCAGGCCGAGCACGCTCccactctcctcctcctccggaGCCCTCAGACTCACCAGAGCAAGAAGAGGCAGGAGATGACCGCCTGGGGAACCATCTCAGCTGTCCTATGGAGGATGAGTACCCCATAGAGGAAGTGACACTGGTCAAAACAGGTGGTCCTCTGGGTCTGAGCATTGTGGGTGGCAGTGACCATGCCAGCCATCCATTTGGCATCAGTGAACCAGGAGTGTTTATTTCAAAGGTGATCCCTCATGGCCTAGCCTGTCAGAGTGGATTACGTGTAGGTGACCGCATCCTAGAGGTAAACTCCATTGACCTGCGACACGCCACCCACCAGGAGGCTGTCAAAGCCCTGCTGTCCAACAACAAGGAGATCCGCATGCTAGTGCGCAGAGACCCCTCACCACCTGGcatgcagGAAATTGTCATTCACAAGCAGCCTGGAGAGAAGCTGGGCATCAGCATCCGAGGAGGAGCCAGAGGGCATGCCGGCAACCCATTTGATCCAACAGATGAAGGCATCTTCATCTCCAAGGTGAGCTCTTGTGGTGCTGCAGCACGAGATAGCCGCCTGAAGGTGGGGATGAGAATCCTGGAGGTGGGCAATCACAGTCTCCTTGGAATGACTCATACGGAAGCAGTCAGGGTCTTGCGTGCCACAGGAGATACACTGGTCATGCTGGTGTGTGATGGCTTTGACCCCAGAAACGTCGCTGGCACAGAGGCATCTCCGGGTGTCATTGCGAACCCATTTGCTGCTGGAATTGTTCGAAAGAACAGCATGGAGAGCATCTCCTCAATAGACAGAGATCTGAGCCCAGAAGAGATGGACATCATGCAGAAGGAGGTTGAGATGGTGAGAGAGACGTCTCAGTGGGAACgggaggagatggagaaagTGGAGCGTATGCGCTTGGAGCGTGAAGCGGCTACTCGTCTGCTGGAGGAGGAGACTGAGagcATGAGCACTGGACCTCTGAAACTGGACTACAAGACACTGGCAGCTCTTCCCACAACCAGCCTGCAGAGGGTCAATCGGCTGTCTTCTACCTTTACTGAATCCTGTCCCATGGAGAGTGCTCTTCAGGCCAGGCCGTCTGGCACTATAGAACCCCTGTGCTTTGAGAAAGCTCATGCAACCCTGTACCATGTAGATGCCCCTGTCCTTCCCTCATCCTCACTGTGCCCAATTACAACCTCAGCAGCACCCAAACAGACCACAGCTATGCCACAGGACCCCAGTCCAGCACCCACAGTCACACAGGAAGCACAGGAAGAGGAGTGTCTTGTGGACTCTCAGCCAATCTGTTTCAAAGAAAATCCCTTCCTGGTAGCTAATCGTAAGAGCAAGGGTCGTCCCCTTGAGGAGCGCATCCTTTCAGGGCCGCCCACAGGCTATGGCAGGCAGGGGCAGCTTCAGACCTGGTTGTATAATAAGCAGGCTCCCTCAGCTGAGCCTCCGAGAATTGACAGTCCTGTCCGGGAGCCTCTTTATTCCCCAGGTTCTCAATTGGCAAGCATTCATTTATCCTCCAATGTGGCTGCCAAGGACAATTCAGCTACCAAGCCTGGTGCCATCCAGCCTATCTCACGAGTACGGCCTCCTGCCTCTCCAGTCAGTCAGGATGGTCACAGTAGTCCCAACCCTTTCCAGCATGGCCCTTCCCCCATCAACTCCCAGACCACTCCTCGTGCCCCATCCCCAGATACTTTCAACGAATTTCCCATCAATGTCAAGCAGGCATATAAGGCGTTTGCTGCTGTGCCCCACTCCATGGCTGTGCTGGAGCCCCCACAGGATCTCTATGGTCAGAGGAACAACTTTCACCCAAAGCAGACATTGCCAGAGCCAGAGGAGTGTAATGAAGTGTTTATAGGTGAGGGTGAAAGAGGGGGCCTCAGCCCTCGACCCTCCCTCTCATCTGACCGTCGTGAGTACAGGAATCTGGCAGCTGTGCCACGCCTGTCTCGCCCCTCCCTGGAGTCTAAGCCCCCCACGTCCTGCGGGAGAAGGAGCCCAGAGCAGCGGTCtttcagagacagacagaagtaCTTTGAGATTGATGTGAAGCAGCAGACACCAGACAGCAAACCCAAACCTCGTGTTTCACTTGTAGGAGAGGATgacctgaaaaaaatgaaggaggAGGAAGCCAAAAGAATTGAGCAGAGCGCAAGGGAGTATCTGCTggatgaggatgaggacgaTGAAGAGGAAGATTTGGCGAAGCAGGTGGCGCAAATGAAGGCCCAGGGCAAGGTTATTCTGGATGGGGTAGAGTACAAGGTTGAGTCTGTCAGCAGCCACTCTTCTACTCCACCCAGGCAATGTGTCACACCTCCAAACTACAGTGCTATGTCTCCCAGCTACTGTGGCAGCTCAGGGACTTCCTCTGTAGATGGTAGAAGTGATTCCCAGCGCAACTCTATGGAGGATAGCTTCAGACTGGAGCAGAGACCCAACTCCATGACTGGCCTGATCCCTGTGTACCCGGGTGAGTCTGCAGCTCCCATCCGTACTGCCAAGGCTGAGCGCAGGCACCAGGAGAGGCTCCGTGTGCAGAGCCCAGAGCTCAGTGTGGCTCCAGACAAGGATCTTTCTCCTGCAGAGAAAAGGGCCCTAGAGGCAGAGAAGAGAGCCATGTGGAGGGCAGCCAGGCCTTATGGTCTAGAGGAAGACGTTAGGCAGTATGAGCAAGACCTGGCCAAGAGGCTCTACCAGTCACGTGTGAGGGCGTCGTTAGACAGTGCTGCAGCTCCTCCCTCTacctgctcctcttcctctcagCCCAGGATGAAGTCTTTAGAGCAGGATGCTCTCAAGGCTCAGATGGTCATTGCTAAGTCCAAGGAAGGGAGAAAGCGAGGCACACTGGACCAGTTAGCTGAATCGCCATCTCCTGCACCCACGCCTTCACCCACTCCTATGGAAGATGTCAGTCCGCGCGCTGTGACATCACCAGGTCGACTGTCCCTGTCAGAAAAGAAGTTTGACTACCGACAATTCGCTGCCATTCCTTCTTCTAAACCTGTATACGACATTCAGTCTCCAGATGCTACAGATGTTCGATTCAACAGTGATGTCTCCACTAGCCCAGTTTCCTGTGTAGAAGCTGATGTGCCTGTAGCTCCTGTGGCCGCCACATCTGCTCTGGAGGAGATGGCTTTGTACAGCAACAAGCGTAAACTCCGACAGGGCCGTCGCAGTCTAGAGACAGCCGTTCCCacataatttcacacacacacacacacacacacacacacgatacagATTATAAAACATAGTGCACATTAGCTAGTGATGCTACAAAGTATAGACAAtactaaaatgtacattcacAGAAATGTGTGAAAGACTTTCAACCACTCTCGCTTCGTTGTCGACCTTCACagtgacaggttttttttttcttcttcttctttctaaaGAAACACTACAGCTTCTTGTCTCTTGCACGCCAGTCTTGCCTTTCCAGCTAACATTTAGCACAGATGTGGAAGGCTTCTCCTCTTGCTCTGTAGTGGATGGTTAAGGAGGGCCTTCATACCATGCAAACTCCactcttgcttttatttttgtttttttttcctactgttTGCTTTTAACAAGCTAAATTATTTTAGATGATACTGATTTGGGTgctttttaatactttaattttaaacctctgatattaatgtaaaaaaagttcctgacttttttttttaaagttgaatgtgttaatgttcacatatcCAGAAGATCAGCCATTTGAAGGGCAAGCGATCATTCTACAGCCTTCACTGCCCCatacatggagaaaaaaaaaacattttacacgTAATTTATTTCCGTAGTGGCCATTGAGgcttttattcactttttaaaagaTGCATTATAATTGGGAATATTCCACCAATCAGTTAATATTTACTGATAGtagatttattgatttatcaGTGCTGCATAGCTCTGTATCAACTTTATAACCATATCATTGGCTTATATCTTTTGGATTTGGATCAGTGTTGCAAATGAATGTATGTTCTTGTTGGTCTTGTGTTCTGAGGGTTCATCTCACCATAAAGCTAAAAAGAACTCATTATAGCCTGCCTGGTTTCATTTGAGTGCAGCTTAAACTGAACTAAACGGCTCTCTAGTCTTCCTGGACCAGGACTAGAAGATGAAAGACTACAGAGGACAAcagaatcattaaaaaaaaaaaaaaatgtcaactttCTGTCAAAGTGCAGTGGTTACGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81994 lncRNA downstream 4577 22379295 ~ 22379533 (-) True G69124
TU81751 lncRNA downstream 195347 22188183 ~ 22188763 (-) True G68923
TU81734 lncRNA downstream 210136 22170080 ~ 22173974 (-) True G68907
TU81577 lncRNA downstream 437873 21945612 ~ 21946237 (-) True G68758
TU81571 lncRNA downstream 537382 21846385 ~ 21846728 (-) True G68752
TU82012 lncRNA upstream 37746 22505790 ~ 22512310 (-) True G69139
TU82009 lncRNA upstream 47660 22515704 ~ 22519266 (-) True G69136
TU82054 lncRNA upstream 161571 22629615 ~ 22631562 (-) True LOC113540019
TU82062 lncRNA upstream 181895 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA upstream 181895 22649939 ~ 22650544 (-) False G69183
XM_026935814.2 mRNA downstream 22957 22358195 ~ 22361153 (-) True rgs9bp
XM_026936139.2 mRNA downstream 29533 22346313 ~ 22354577 (-) False mcur1
XM_026936140.2 mRNA downstream 29534 22345935 ~ 22354576 (-) True mcur1
XM_026936957.2 mRNA downstream 38459 22338753 ~ 22345651 (-) True dph2
XM_026936189.2 mRNA upstream 2175 22470219 ~ 22482144 (-) False puf60b
XM_026936190.2 mRNA upstream 2177 22470221 ~ 22482144 (-) False puf60b
XM_026936188.2 mRNA upstream 2177 22470221 ~ 22482144 (-) False puf60b
XM_034303631.1 mRNA upstream 2177 22470221 ~ 22479106 (-) False puf60b
XM_034303630.1 mRNA upstream 2177 22470221 ~ 22479106 (-) True puf60b
TU81579 other downstream 448941 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 965871 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 1013100 21368250 ~ 21371010 (-) False LOC113539989
TU82055 other upstream 164141 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 825907 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1011921 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1012008 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 1025335 23493379 ~ 23493919 (-) True G69592