RNA id: XM_026936638.2


Basic Information

Item Value
RNA id XM_026936638.2
length 6447
RNA type mRNA
GC content 0.45
exon number 19
gene id lrch4
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14773998 ~ 14809362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCCTTGGTCGCCAGATTGACAGTTAAGTCCGCGCGAGCGCCTCTTCAGCTAACTTTACCGAGCCGCACCGCCGCTGGATTATAACACCGCTTCCGGATAAGAACACGTTCGTGAAAGCTCGTCGCACGCTGGAAGTCAGACCTGAGGAAATGAGAATTTAGGAGGGTCGGTAAGCGAAGTGAACAGGCCAGAGTAAAGGGGTTTAGTGTTGTGTTCATGGCTGCTGGGGATGGCGCGCAGCTGCCGGCGACACTAGCGGCCAGCAGGAGCGTGGAGAAAGCGCTGGAGGAGGCAGCGGCCAGCGGAGCGCTCGTGCTTTCCAATCGCAAACTCAAGGAGTTTCCCCGCACAGCCAGGAACTACGACCTGTCCGACATCACACATGCAGACCTGTCAAAGAACCGGCTGTGTGAGGTGCCAGAGGAGTTGTGCCAGTTCATCTCTCTGGAGACACTCAGCATCTATCACAACTGTGTGCGCTCAGTCCCCTCCACCCTCTGCCAGCTACAGGCTCTCACCTACCTCAACctcagTCGTAACCAGCTGTCCAGTTTGCCCATGTCAGTATGTGAGCTCCCTCTGTTGCGGGTGCTcaacatcagcaacaacaaACTACCGGTCCTTCCTGCTTCCATACACAGACTTGTGCATCTCCGGCAACTGGATGTGAGCTGTAACGAGCTGCAGTGTTTGCCGGTGGAACTGGGTCAGCTGGAGGGTTTACGGGATCTGAACTTGAGAAGAAATCAGCTCACGACCCTGCCAGAGGAATTGGCTGAGTTGCCGCTAGTCCGTCTGGATGTCTCCTGCAACAGAATTTCCCACGTTCCCGTGTGCTATCGGCACTTGCGGCATCTGCAGCTCATCTCACTGGATAACAATCCTTTGCAGATGCCCCCAGCGCAGATCTGCTCCAAAGGGAAGTTCCACATTTTCAAGTATCTAAATATGGAGGCATGCAAAAGGAGCCAGGACCAGCTGGAGAGAGCTCTGCGGCCCAGTGGTTTCAGCAGCTGTCTTTCAGATCAGGAGCTGTTCCCTGGTCAGTATGGTGGTCTGGACTCTGGCTTCAACAGTGTGGACAGTGGCAGCAAGAGATGGTCTGGAAATGAGTCGGCCGATGATTTTTCAGAGAGATCTTTGCGATTGATGGAAATTTCCCGTGAGCAGCACAGGGAAGAAGACGAGAGGAACACGTTGTTGGATACACCCAAAGTGAATGGAGACATGGAGCAGGTGGATTTCATTGACAGCAGTTTAacagaagaggatgaggaaagcTGCAAACCAGACACTCCCAGGCCTCCACAGTCATCACACGCACAGGAGAAGACTGAAAGCAGGTCCACGCCCTCACAGAGCCCTGATTCAGCTGGCAGCAGGAGGAGTGTTGGCAGTGAATCGGCTGATGCAGGCCCACCGTCCAGTCCTTCGCTAGAGGAGAAGAAGAGGCCTGGCACGCTGCAGCTCTGGCAGGAGAGGGAGCGtgcgcagcagcagcagcgagaGCGACTGCAGAAGACAGCagtaaaaacaggaagtcagtcaGCAGCAACAGGCAAACAGgcaggaacaggaagtgtttcGTGtGGTGACTCTACAGACAGCAGTGCCACTGTTAACGGTCTCCGCCAAAGATCTGTTACTATGGATCAGGTTCAACCAGTATCCCTCCAGCGTTCAACAAGTCGCACAGatgtGCCCTCTGCTAAGCCATGTTCTCCTACTGGCAGCACTCCCAAACCCAACAGCTTCCTCTTCCGCGCCTCTTCACGCTGCAATGTCAAGACTTCAGgATCAATCCAGTCTCTGGCTGAGTCAGGTCGCAGTGAGTCCCGATCCACGCTCAAATCACCACGAGAGGAGAGAGCAGAAATCTCCCAGTTACGTAAGTCCCTGGAGTCTTCTCTGAAGATCACCCTTCCAGAAGATCTCGGCGAATCGTTGTCCAACGGCACTATCCTCTGCCAGCTAGCCAATCACGTACGCCCTCGGTCAGTGTCAATCATCCACATCCCTTCCCCTGCTGTGCCAAAACTGAGTGCCGCTAAGTGTCGTCTCAACGTCGAAAACTTCCTCGCCGCCTGCCGCAAGCTGGGCGTTCCTGAGacGGAGATGTGTCTAGCGTCTGATATCCTCTGCAGTAAGCTGCGTGCAGTGCAGCGCTGCGTGGAGTctctctttccCTTCTCCCTCATCCCCACCGGCTTCTTGCTCTTCTACTGCCTCGTCATGGGCCTGCTCTACCTGCTCTACCACCACCTTACTGCATAAAGCGCAtacgtgtgtgtttacatgagaGCATGTGTCAGATCTAATCAATGTGTGTGCTTCCACATATTAATAAGGCTTTGCAGCAGTGCACTTTCACACCATGGCGCTCGAGGCATACACTGCCAATAGCACGACACAAGATGGAGATGCGCCATAAGTAGAGCTAGCTGCACTGCCATCCAGACAGCCTGGCAatggcacacatacacactcatacgcCACATAGTTCTGTTACACTCTGTAAGCTGCAGTGAGTAGATGTGGAACCAACACAGTGGTTGTTTAATGCTGTATCTGTCTTAAGCAgaattgtatataaaaatacttAATACTGTTACTTAATACTGTAAGTTTATGGACAGGGAGACTTTGTGGGGTTGcagtatgtttattattattattattattatttttttttttaaactcatgaattacaaaagaaaaacatttcatataaGCTGCCCAGACAAAATTTAGCCTCATCTGTCATTTCTTTTCTAATACTTGGTTACGCCTCCCTTCAGCTTAATAACAGCGCCAATCCGGTTAGGTGCGGAATTCAGCAGAACCTTCTGTCAATATTAGACCACTCTCACTGACTGGGTGCAACTCTGTTAGACTTCGTATAGACTACTTTGGTATTTCTCCTGCTGTTCTAAATAGTTCcacaagttttcttttttttctgtaaaaaaaaaaatttttttttttaccccatttgGTCATTTGCGAATTCTCACCCACTGGCCAGCTCTACCCTATCACACGTCAGCTACCAATTGGGGAGAGTGAGTGCGTGCTTTTTTCCGAGACACATAAAATCAGCTAACGTATCTTTTTGAGCTGCTGCTCATGAGCTCATAGTAGCACATGACTGGCTGTTGCGCTcagactgacaggggagagagtaacaCCATTCATTCCATctagagagcatggccagtgatggctgtggcatcattgagAATCAAATTTGCAATCTCCCCcttctgttgcatcactcaggAGCCACATGCCACAAGTATTCTGTGTAGAGATGCCTACGTCTATGTGGTTTAGCTGTAGCACTTAGGATTTCTGACCCCTTGCTAAAGCAGTGGGCTGACCAAACGTGAATAAAATTCAGACCAAACGCAAATTCTGTAAAGGGGAAAGAACACTGGCATTGACTTTATCTAGGTTGTGTGAGCAGAAGGCAGAGGGTTTTGTGATAAAATCCTCTTTGGGCAGACAAGTTATTCTTTCATATCAGTAATGAAACGCTAAACACAAGGCATTTATTGCTTTAATGCTGTTATCACAAACCCGTCCTGACCTCCAACGTATGCTAGGGTTTTTGTGGTTAAATTCAGATTTTTCTGTCTGCCTGCtaagattttcttgttagcagtgtTGGCTTCTCTGTCTGAGGGATTGAGGTGATTTTGCAAGCGAGTCAAACTGTCCAACTGCTTGTTGATTTGGTCCTGTGAGTGTCAGAGTTGTGTTCTGCTTGAACCTGAAGCACCAAACCTCAGAATCTGGCCAACAAACTGACCATGATTTAATGATGAGTTACCGTCGTCTATGTGCTGCTATTGATGGATGCGGatgagtctgttttttttttggtctgggGAGCTTATTAAAACCCTTAAAACTATGCTGTCCATCACAGCTGGATGATCTTAATCAGAAATAGTCTGTTTTAAAGTGGTATTTATCTGTTCTTAGTATCCACTTCCCAAAGGGCTTCGCCACCGCTTTGCCTTAGCTTACACACAGGATCGAACTTTGAGGATGGTGTAGTATTTGTACGTGTCCCTGGGAAAGAGTGTGTTTTATAACGGTTTATTTAGCCACCGGCACAAATTGTAAAATCTGCTCACATCTTGTTCAAAGGGCTTTAAATTTTTTAACCACTTTGCTTGCAAATGTAAGTGCCTGCAATGTCTGACGCTACTGTTACAAACTCCACCATGTCCATTCCAGTCTCTCTGACCtgctgcatgtgtgttatttgaCATTTTGGAATGGTGTGTGCAAATGAGTATTAAAGACCCCGTTCCCATTTGTCCAGTTATTCAATCAGAATATTTCTTTCAATTATTGGGGTTGAGGGACTGGAATGAaatgtttgctgtttgtttctttgtttttgtcctgttgaCTGACTGTGACCACCAGGGGGCAGTGGTgttgcacaactgcactcaAAGCTATATGTCTTATGGTACCGAAGTAATGTTTCTGAGTTCTGatgttgtatgtatgtgtattattttgttttggtcAGCTTGCTATGTAAAATTaagttattgtttatttattcatgcattcCTGTGTCAAGCAGCAGTATTGGGTGAAACACGGCCTCACAGAGAAAATCCCTATCAGCTCTATCAAAGCATTGCGAAATTTGACTCCTTTAATATGTAGTTTTACACAGATTATCCactgtgttcattaaaaaaagtggTCTGGAAATACAGAGCCCCAAGTCGGAATATCAAATGCAAGAACATTTTCTACATCAGTAAATATCAGCTCctgtcacatgtgtgtgtatatacaaacaaaaacagcaagtgTTAATGAAAGCTGTAAATTCTTCTCAGTGGAATAACATCCCATTAAAACCTTCTTAAGCTTCTTTTTAAATGCCTCAGTAATGTTGGTTTTAGGCCCATGAGTACCCATGTTTCCTCAGTACTGCTGCTGTTGCTTTTGTGTTCCCTGCATACTTAATGTGATTTAGCAGCTTTGCAGACAGTTGACTAACGAGCAGACGCTCATCTGGAGAGAGTGATAAGGGCACATGGGAGAGAATGGAGTgaaagaagaaggagaggagaagCACAAGGGTGGGCTGATAGGATAGAAAATGTgaggtgaataaaaaaaagaatgtttaggAAATAGGTTAATTTTCACTTATCCAATTTGTTGAATGCTTCCCactaatgtgttttaatgtctTACCACATTTAAAATGAGCTTTCTCAAAACTACAGTATGCATGGATGTGAAATCTCTTCTCATGATTCCCACAACTTAAATCAtagtttttcacattttcagtcCACACAAATGAAATTGCCTGAAGCTGTAACCGAAAGCCATGTTGCTTATTCAGAGCAGGGATGTTGAACTACCCACAAATGCTGCCCTCTtcgttttttccccccttttttccAGCTACTTTCAGTTTTTGTTGGAGCAAGATCTGCAATAATGTTTCAACCAAAATATCTCTTAGGGTGAAGCGAGTTATGAAAGCACCAAACTCACTGGAGTTGAATTTTGAACTTTTAAAGAAATTGTTAAGAAGCAAGatgtattttgtaatatttatatccCTCATGTATTTAAGGAGGTTAATTGTAAGTTTATAtagattcagattttttttttgctgtaattattaaaaagaaaaaaaaaaaaaaaaaaggatcttattttctgtgctgcttccttttctgttttctcttatGTTTTGCtttcaatgtgtttttttctttctcaagcCAATCATCTTCCCTCAGGTCTCTGTTGATAGCTTTTAAGTCTCTAGCCATTGTGTTTGCTTATTGCTAAGGTAAGTGTTAAATCCATCCTTACTGCGAAGTGAAGGAAATAAGGGATTGTGCATGAGTGAGTTTAGATCTTGTTGAAACATGTTCAGCTTCTGATGATACACTGATTGGGAAAACAACACACTTTTCCTTTCTTGCTGCAAAAAAATGCATGGCTGTTAAAGCTTGAAATAGCGACAGTGGGAAAATCTACTTGTGGAAGTTTAAATATGAGAATGTGAGGTATTGGGTAGTGTGCATGCTGTTACTGCTGCTTTCCTTGTCCTTTCTGCACAAAACCTGTGACCTGATTAAAGTGTCTTTCAGTTCCAGTCCTGCACTACCATGTCCTGTTGAGCTCTCCGGCTATCCATAAAGCACTGCCTGAACTCAATCTGGTGTGTGAGAGCCgtaggggaggaaaaaaaaaatgaaacactgcagtGTAGGTCTATCAGGACTGGAGCTGAGAAACAGGAATACGAAATACAAATCCTCGTTAGTGTGTTGTTGTCTGCACTAATCTGTATGTGCACTTGTGCATGTTTGTCCTTGGTGCTTCATCACATGTTTCCGCATGCCTGTTTCTAACCTGTTTGAACTGTCCTCCAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578094.1 lncRNA downstream 141956 14622036 ~ 14632753 (-) True LOC117597192
TU76369 lncRNA downstream 479010 14295494 ~ 14295699 (-) True G64461
TU76343 lncRNA downstream 520946 14250611 ~ 14253763 (-) True G64440
TU76336 lncRNA downstream 543881 14178574 ~ 14230828 (-) True G64434
TU76186 lncRNA downstream 733421 14040666 ~ 14041288 (-) True G64291
TU76798 lncRNA upstream 52562 14861924 ~ 14862199 (-) True G64860
TU76869 lncRNA upstream 157845 14967207 ~ 14968539 (-) True G64929
TU76907 lncRNA upstream 391936 15201298 ~ 15201545 (-) True G64964
TU77240 lncRNA upstream 1096732 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA upstream 1115092 15924454 ~ 15925161 (-) True G65260
XM_026935900.2 mRNA downstream 93866 14676443 ~ 14680843 (-) True rwdd
XM_026936677.2 mRNA downstream 100336 14648948 ~ 14674373 (-) True rell1
XM_026936676.2 mRNA downstream 100351 14648948 ~ 14674358 (-) False rell1
XM_026936435.2 mRNA downstream 270880 14298897 ~ 14503829 (-) True pcxb
XM_026936270.2 mRNA downstream 554426 14157436 ~ 14220283 (-) False plcb3
XM_026935921.2 mRNA upstream 22402 14831764 ~ 14840438 (-) False pcolceb
XM_026935920.2 mRNA upstream 22402 14831764 ~ 14840437 (-) True pcolceb
XM_026935919.2 mRNA upstream 32111 14841473 ~ 14874552 (-) True per1b
XM_034303872.1 mRNA upstream 66332 14875694 ~ 14893155 (-) False dthd1
XM_034303871.1 mRNA upstream 66333 14875695 ~ 14889389 (-) False dthd1
trnae-cuc_13 other downstream 39982 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 531028 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 865352 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 866709 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 870688 13903831 ~ 13904021 (-) True LOC113540713
trnap-ugg_2 other upstream 1066465 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1070109 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1164217 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 1245660 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 1609948 16419310 ~ 16423164 (-) True tnfsf12

Expression Profile