RNA id: XM_026936660.2


Basic Information

Item Value
RNA id XM_026936660.2
length 6906
RNA type mRNA
GC content 0.47
exon number 22
gene id ptch2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24883746 ~ 24911790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCTTAGCAGCTAATAATAGGCGATGTTTGCAAAGTAATTTGCCTCTTCCTTCGGCCAATGAGAACCAGAGCGCTCCTCCATCAAAACCAAAGCGCTTTTTTTCAGGCTCGGTCGAGAGGCTTGCCTTCCTCCAAATGCTCAAGTGCTGCGCGAGCGCGGTCACACTCGGCGGAAAGAGCCGCTCGCAGCGcaccgctctctctctctctctctctctctctatctctctctctctcttgcagagACGCAAAGCAAAAGAAAGCACGCGCGTCCAGACCGAATGAAGACCGAAGGATCTACACGGATTCGAGCCCATAATGTTGGCATGGTGCTGGAGGAGCTCGGCTCAGAGGAACACTAGCACACAGCGACCTCCGGAACCGCGCCTGGCGGATGCGCTCGCGCCTGCTCACGGATTACTGAGGCGcttctcttttattttgttcGCCTCGTCGACGTCTCGTTTGGACTATGGCCTCGGCTCCCAGAGTGGCGGGGGCCGACGGGTTTGGAGTTTTACCCCCGAGCTACACGCGCTCCGGTAACCCGGACCTCACCCGCAGACCCAGCTACTGCCACGCCGCGTTTGCGCTCAAACAGATCGCTAAGGGGAAGGCTGCGGGTCAGAAAGCTCCGCTGTGGCTCCGGGCAAGGTTCCAGGCTCTCCTCTTTACTCTGGGTTGTCATATTCAGCGACACTGTGGAAAAGTGCTTTTTATTGGACTCCTCGTGTTTGGAGCCTTCTCGGTTGGCCTGCGAGTGGCCGCCATTGAGACAGACATTGAACAGCTATGGGTGGAAGCTGGCAGTAGGGTGAGCAGGGAATTGCGTTACACAAAGGAGAAGCAAGGAGAAGAGGCAGTGTTCACCTCACAGATGCTCATACAGACACCCAAACAGGAAGGAACCAATATTCTTACCCAGGAAGCTTTGTTGCTCCACCTGGAGGCTGCTGTGTCTGCCAGCAAAGTCCAGGTGTCTCTTTATGGAAAATCCTGGGATCTTAACAAAATCTGCTTCAAATCTGGAGTCCCAGTTATAGAAAATGTCATGATTGAGAGGatgATTGACAAGCTATTCCCCTGCATGATTGTGACCCCACTGGACTGCTTCTGGGAGGGCTCCAAACTGCAGGGAGGCTCAGCGTACTTACCGGGGATGCCTGACATTCAGTGGATGAATCTGGACCCTCTGAAACTCATGGAGGAGTTGAGCCAGTTCACCTCATTAGAAGGTTTCAAGGAGATGCTGGACAAGGCTCAAGTAGGCCATGCCTACATGAACCGGCCTTGTCTTGATCCCAGGGACCCAGACTGCCCACTCAGTGCCCCCAACAAGGACCTGCAGCAGAGTCCAGATATTGCTGTGGAACTACAGGGTGGCTGCCATGGTTTCTCAAAGAAGTTCATGCACTGGCAGGAGGAGCTGATCCTGGGGGAACGGATGAAGAACTCGCAGGGTTTTTTGCAGAGTGCAGAGGCTTTGCAGACCATGTTTCTCCTCATGAGCCCCAAGCAGCTATATGAACACTTTAAGGATGACTATGAGATCCATGACATCAACTGGAATGAGGATAAGGCCACTGCCATCCTGGAGTCCTGGCAGAGAAAGTTTGTTGAGGTGGTCCATGGAAGCATTCCCCAGAACTCCTCCTCTAATGTCCACGCTTTTTCTACCACTACACTCAATGACATTATGAAGTCCTTCTCCGATGTCAGTGTCATCAGGGTAGCAGGAGGTTACCTGCTCATGCTGGCCTATGCATGTGTGACCATGCTCCGCTGGGACTGTGCTAAGAGTCAAGGGGCAGTGGGGCTGGCTGGAGTGCTGCTGGTGGCTCTGTCTGTAGCTGCAGGTTTAGGGTTATGCTCTCTGCTGGGGTTGTCTTTCAACGCCGCCActacacagGTGCTGCCATTTTTGGCACTGGGCATAGGGGTGGATGACATGTTCCTTCTGGCTCattctttcactgagactggcTCCAACATCCCCTTCAAGgaaaggACTGGTGACTGTCTCAGAAGGACTGGCACTAGTGTGGCTCTCACCTCTATTAACAACATGATTGCCTTCTTCATGGCAGCCCTAGTGCCCATTCCTGCCCTTCGGGCTTTCTCATTGCAGGCTGCTGTTGTGGTGGTATTTAATTTTGCTATGGTCTTGCTCATCTTCCCTGCAATTCTGAGTCTGGATTTGCATAGACGCAAGGACAAAAGACTGGACATCCTTTGTTGCTTCTACAGCCCATGTTCCTCTCGAGTAATCCAAATCCAGAGTCAGGAGTTCTCTGATGCCAATGATAACCATACTCACCCTCATGACCCAGCCACCCCGACTTTTGCTGGTTCCACAATCACCACCAGCACCCACATCACCACCACAGTGCAGGCTTTCACCCAGTGTGATGCTGCTGGACAGCACATTGTCACCATTCTGCCCCCAACATCTCAGATCTCCACCAGCCCTCCATCTGTGGTGCTGTCACCCCCAGACCCCAGACCAGCTGCTGACCCTTACGGCTCCCAGCTATTCATGCCTTCCAGCTCCACCCGGGACCTGCTAGCCCAAGCAGAGGAGCCTCGACTGGGACGCGAGTGTGTGCCTCTGCCCTTTTTGCAGTGGAACCTGCCCCGCTTTGCCCGAGAGAAGTATGCACCGCTTCTGCTTAAGCCCGAGACGAAgacagtggtggtggtggtatttGTGGCACTGCTCAGCCTTAGCCTCTATGGTACCACCATGGTCCACGACGGCCTCTACTTGACAGATATTGTGCCCAGAGACACAAAGGAGTATGATTTCATTTCGGCCCAGTTCAAATACTTCTCTTTCTACAACATGTACTTGGTCACAATGGATGGCTTTGACTATGCTCACTCTCAACGTGAGCTCCTGCAGCTTCACAATGCATTCAACTCAGTCAAATACATTGTGAGAGACAGTAATCAAAAACTGCCCCGCATGTGGCTCCACTACTTCCAGGACTGGCTCCGAGGACTCCAAGCTGCATTTGATGCTGACTGGGAAGCAGGCAGGATCACCTATGACAGTTACCGCAATGGTACTGAGGATGGAGCATTAGCTTACAAACTCCTTATCCAGACTGGTTCTAAGAAAGAGCCATTCAATTATAGTCAGTTGACATCTCGCCGCCTGGTGGATAATGATGGTCTGATCCCCCAAGAGGTCTTCTACATCTACCTGACTGTGTGGGTCAGTAATGATCCACTAGGCTATGCTGCATCACAGGCCAATTTCTATCCCCACCCTCATGAGTGGACCCATGATAAATATGATACCACTGGAGAGAACCTACGTATCCCAGCTGCTGAGCCGCTGGAGTTTGCCCAGTTCCCCTTCTACCTGAATGGTCTTCGGCAGGCTTCAGACTTCATTGAGGCCATTGAGAGTGTGCGCTCCATCTGTGAAGAATTTATGCGCAAGGGCATCCCAAACTACCCCAATGGATACCCGTTCCTTTTCTGGGAACAGTACATTGGCCTACGCCACTGGTTCCTGCTGTCTGTCAGTGTGGTGCTGGCCTGTACCTTCCTGGTGTGTGCCATCCTGCTGCTCAACCCCTGGACAGCAGGCATTATTGTTTTTATCTTGGCTATGATGACAGTAGAGCTGTTTGGCATTATGGGCCTGATTGGTATCAAGTTGAGTGCCATCCCTGTGGTTATCCTTATTGCCTCTGTTGGCATTGGAGTGGAGTTCACTGTGCATGTTGCACTGGGCTTCCTGACTGCCATCGGGGACAGAAACACACGCTCAGGTGTGGCTCTAGAGCACATGTTTGCACCTGTGATGGATGGTGCCATCTCCACTTTACTTGGAGTGCTTATGCTGGCTGGCTCTGAGTTTGACTTCATCATGAGGTACTTTTTTGCAGTGCTGGCCATTTTGACATTGTTGGGAATTCTAAATGGCTTGGTATTGCTGCCTGTTCTGCTATCAATCATGGGCCCTCCAGCCGAAGTCATTCTTGCCAATAATGCCAGCGGTCTCTCCAGTCCCTCATCCGAGCCCGTGCCCAGGATTATGAACAACCATGGCTACTATGCTGGGCACATCCCCAGAGCACCACGACAGGCCTTCACTGAGGTCTCAGACTCTGAGTACTACTCCGAAACAACCAACACGTCTGGGATTGGTGATGAGGACTACAAGCACTGTGACAGAAATGCGTACATAACCACACCTACACTGCCGCCAACTTCCCACATACTGCTGGAGGCCAGCAAGAACCCATCTTTTCCGAAGCTCACAGTGGTAAAGCCTTATAGTGAAATTCCATCTGCAACAAGCCCAAAAGATCCACCCAGTGAGGCAGCCCAGAATGCAGTAAACTCCATCAGTTCACAGGTCACACGGTGGGATGGAAAGCCGGAGTACCAGGGATCTAGGCGAGACCCTTTACCCAATGACAGTGCATACACTCATGGGAGGACTACTCACTGTGATCCCAGGCTACAGCAAGGCAGAGGGCCACAGCAGAACAGGACTAAAGCTCTGCCCCATGGTGGAAATACACTGCAGCAGCCAAGCAACACTGTCACCATGGTTACGGCCACTGCCTCGGTAACCGTGTCAGTGCACCCCAATCTGCCGGGGTCATATCAGGGTAGCATGCACGAGGTCTTTGAGGATAGCGTGTCAGACTCTTTTGAGAACTCTAAGAGGACTTCACAAACATACGGGAGAGCTAATCAGCCTTCCAAGAGAGACTCTTTGCAACTGCAAGATCTGGAATCCCTAGATAACAACCAGCATCAAGCTAAACAGGGTCTAGgtggTACATGGACACAAACAGCCAAAGATTGCTAGACAGCACACATCTTCACCCCCACAATCCCACAAACCCTTTTGTCTGGAATCTATCTATGGCTGTTTTGGGATGTCCCTATGCTCTGTCTTTCTGAACTGTACATAAACCTCACAGATAAgaggatttattttaaaagattaaaattatacatttataaatatatattttaatactaAAAAGAGGGGAAAACTATTTAAAAGAGTACTGTATCACTTGTGTATTCTCTTATGTAAATTCAGATATAAGAGGATTCATAGGCTTTGTTTCCTCTTTTGTAAAGATTAAGAAAtgtgttatatgtaaaaattcAGAGAAGTTAAATATTAggttattgaaaatgaaaggTCAGTGTTCTTTTTTGCTGCTATACATCATATATGATGAGACGATTTGCCTTGAAAATGCGCAGTACCCCCTCCTCGATGTAAGCTGTAACATAACATTAACATGTTCTTACACTGCAAATGTCTTCAGCTTGTTCCcagattacattacatttatatgtattcATTTGGCAAACACTTCTATTCAATGTGACTtagaagagagacagaatcCAATTTGAGCAGTTGAGGCTTAAGGGCCTGCCCAAAGGCCCAGCAGTGGATATCTAGCAGTGTTGGGATTTTAACTCACAACCTTACAGTCCCTGACACAGAACTTTAACCGCTGAGCTACCACTGCACTGTGTTCACTGATGGTGTCTTGTCTTTGATTGCACTGTAACATGTAGAAACTTAAAGAGATATTCCATCCATTTTTCGTcacaaataattaatttctttgaaatatttctCCCTACctttattttattgacagcAACCACTGTGCCTTTGTTATTTTACATACAATTGGAAACTATATTTTACATTGGTGTAGTTCTCATGAAAAATGACACACTTCCTTCTGTGGTCCTAAATTTGAACCTGAAGGTTCCTCCACCTGTAGTACATTATAGTTCtcactgtctcctctgtctGTTGAGGTCAGTAAAACATGCTGTGTTCTTCAGGACTACAAGATCAAATGACATTCACTTCCTAGGTATTTTGGATTCATTTTTGCAGATAATACACTTGAATACTTTAAGGGGCAGCAAGATAgagatttttctatttttattttttaaatatcattagcTATATAGTGAGTTAAGTCTCACATTTGTTCCAATGCTCCTGCTGAAGCTATGAGAGATATAGCAGGTCAGTTATATGGTcaatattgaattattattttcccCAAATGTCACTCAGAAAGGGAATCTTATTTAAGTACAAAGggaggtcagtttttttttgtttttggctgcTTTAGAGATAATACATAGTTGAAGTCCTGTGCAATGGTGGATTAGGTCGTTCTGCAGGCTTCTCCAGCTAGGCCAGTGTATCACTCTTAGAGCTCATTCAAGCCAgtatttcttcttttctgtctcttggaTTTTGAGTTTTTCAATACTGGTCACAACACTGCCAGGTTAAACCCAGGGAAACATTAGATTTAAGTGGCagctttgtttctttgttgtaaTAGAACTAGAAACAGAACAATATGTAGCTACTGAATctaaaagacaacaaaaaaacaacataacacAAAGTCAAGCAAGCGATCCACAGTATACATGTACATGAAGTACATGCATGGTGAGATAGCAGAAAGGAAAGACTAGGGGATGGGGGTCCTGTATTTCTATTTGAAATGTATGTCATGCcatatgaattatttatataaaaagttttatttttgtagtttgtACAGATGTTAGTCACTAGActgatgttatatttttaaagagtaaatatattacaaatgcaaatatatatatataattatatctaTTTGTTGCTTTTTTGGGGCGGGGGGTGTAAAATTGGTTGGAGTGGaggttttcagtttttttatttgctgttagaTGAGAAGAAATTCTGTTTGGAAAATGAAGGATGGGTTTGTGGTTGTCGCTGTCCACCTTGTGTAGATGTCCTTGCCTTTCTTCTTCATCTAAAGATTTGAACAATATCTATTTGttgtctaaaacactgacttcaGAAATCCatgtgcaa

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009954 proximal/distal pattern formation biological_process
GO:0048635 negative regulation of muscle organ development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K11101 PTCH2; patched 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83664 lncRNA downstream 10913 24872630 ~ 24872833 (-) True G70540
TU83444 lncRNA downstream 317235 24566201 ~ 24566511 (-) False ccdc24
TU83122 lncRNA downstream 703882 24179031 ~ 24179864 (-) True G70044
TU83096 lncRNA downstream 737505 24145890 ~ 24146241 (-) True G70027
TU83095 lncRNA downstream 737962 24145578 ~ 24145784 (-) True G70026
TU84048 lncRNA upstream 497924 25409714 ~ 25445048 (-) True G70906
TU84116 lncRNA upstream 641287 25553077 ~ 25554229 (-) True G70970
TU84165 lncRNA upstream 659519 25571309 ~ 25571525 (-) True G71013
TU84189 lncRNA upstream 698447 25610237 ~ 25610440 (-) True G71037
XR_004578064.1 lncRNA upstream 819603 25731393 ~ 25782894 (-) True LOC117597162
XM_026937077.2 mRNA downstream 128633 24748101 ~ 24755113 (-) True atp6v0b
XM_026937068.2 mRNA downstream 143486 24601870 ~ 24740260 (-) True b4galt2
XM_026936541.2 mRNA downstream 297698 24565741 ~ 24586048 (-) True ccdc24
XM_026936542.2 mRNA downstream 297799 24565741 ~ 24585947 (-) False ccdc24
XM_026936854.2 mRNA downstream 721953 24150372 ~ 24161793 (-) False prpf4ba
XM_034304115.1 mRNA upstream 7737 24919527 ~ 24963142 (-) False eif2b3
XM_026937228.2 mRNA upstream 7861 24919651 ~ 24963880 (-) True eif2b3
XM_034303672.1 mRNA upstream 101416 25013206 ~ 25022416 (-) False cenpl
XM_026937139.2 mRNA upstream 101416 25013206 ~ 25021393 (-) True cenpl
XM_026937140.2 mRNA upstream 101416 25013206 ~ 25021379 (-) False cenpl
TU83344 other downstream 578820 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 846892 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 1351730 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 1366076 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 1367387 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 1461968 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 1560290 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 1625312 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 2184812 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 2291993 27203783 ~ 27204186 (-) True G71909

Expression Profile