RNA id: XM_026936677.2


Basic Information

Item Value
RNA id XM_026936677.2
length 2816
RNA type mRNA
GC content 0.44
exon number 7
gene id rell1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14648948 ~ 14674373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGTGATATATTTCGGTAATATTTTGGTGAACAGGAAGACAGCGTCGTCAGTCTGCGTTGTTTAGTTGTTACAGTTGTACCACATTTCCCATGATCCACTTGACCCCTAACTTCCACGCTATAAGCCTGGGAGGAAACGCACTGCACTCTGGAGTTCCATCTGCTGTGAGGAGGAGTGcgtcttttctcttttaaatctgtgttttaATTCAAAACTAGTCTCGTAATTATTATACgtgagtgtttttcttttttaaataccaaattAACACTCGTAACTCCGAGGAGGTGTAGTCgtgtatccacacacacacacacacacacacacacactcagagcttCACGTTACAGAGTGGGAAGTTCCTCAAACAGCTCGACTCAAGAAGAATGAGGAAACACCAGCAAACCTCAGACTCCGAGTTTAGCTAGCAGGTAACCTCCCGGCTCTACTATCTGCCCGACTCTTCCGAGCCTGAACACGGCGGTTTGGCTCCTGTGAGGCTCAGGACTCTTCTCTCAGCCCCATGGCGGATCCTGCAGTGAGCGTCAGTGCGACACGGAACAAAACGGATAATGGAGGGATGGTGCACGGCAGCTCAGCTGAGTACATAGCCTTCGGCCTGGTGCCCGTCTTCTTCCTCCTAGGCTTGCTGGGCATGTTAATCTGCCACATACTGAAGAAGAAGGGGTATCGCTGCACCACAGATGCTGAGGAACCAGATGAGCctgagggagaggaggagaaacatCTGGAGGACGGAGATATGAATGACACCTTCAGTGAGGGCAACACAGACACCGTGGGCCAGATCGTTCACTATATCATGTCAAATGAAGCCAACACAGATGCCCTGAAGGCCATGGTTACTGAGAACAGCACAGACTCTGATGGcACTCCTATAACACCTACCACGCCTGCTCCTGCAACCCCTGTGAGCCCTGTGTCACCCGGAGCTCCTGCCGCAGCAGCCAAACACACCTGTAACCACCTTCACACCATCGGCGGAGTGGTGGGGCACAGCAACATGTGTAACCGCTGTAATCAGAAGAAATGGCCCCTCATGCGGCGCGGCTCCAACAAGAAAGTGGAGAGGCGCGCCCATGCTGGAGAAGTCACTGTGCTGGCAgttggcagGTTCCGTGTGACTAAAACTGACCCACGGCCGGCCCGGGAAAGACGCAGCCTGCTGATCACTGAGCCTAACGGCAGTGTCCCTGCCACGCCGGTAAAGACTGAGGCAGCTCCACTGAACAGCAGCACAGATGCACAGCCTAAGGCAGAGGCTGATGATAAAAAGTGATTGTGGGGGAGAAGCAATATCTGTTCAAGTATAGTCAAGAGaaaattttaaacatgttttaaaccCTACCACAGCACTGACAGCAGAGAGGGAGGAAGTAACTCCAAGGCCCCAAAGACAAGATGGAGGTAAAAGATGgttagaaagaagcaaaatgcaTAGGACTTTTAATTTGAACTGCAGTATTAGACTCCAATCTCTTGCCACTGGGGTTTGTTTGTGTATCTGGGCAGGGAGGAGGAACACGCACCAGTTTGTCAGAGTTATTCCATCACCGTGTCATTCCTCCctttataaacacactgcatcatTAACCACGCACGGAGtcgttttgtacattttaatggCTGCGAGCATATCAATGGTTAATCCACAGTCAAACATACGCTCACATTACATTGTAGACTCCAGAATGGTTATGTGACCCAAGGTCATGTGACTCGGTCTACTACTTCCAAGAAGCAGGGACGTTTTTTTTAGCGTATTCTTTTCAGTTTGATCACTACGGAGAACCATAAAACCACCTTGGGTACAAATTTAACAAAGCACATGTCTGAATGCATCACTGTGTATGACCCTGTTCTACCTGTCCACCAGGTCATTGGTTTTATATTGCTTTGCCAAACCCTTTGTGCCTTTAACCAGATCAGCTAGATGTTTAATGTAAGCCAGTGTCTGCCAAATTGTCTGTTTATTACTCTTAGTGTGGCAAAACTCTTAGTGTGCTTTGTGTTTAGGATATACGTAGTTTTATGATGTAGTCTCCATCCTGGTATAAAACGCCATTGTTAGTGCTCTATACTTTCCCAAATGTCCTCTTGAAGCCATATGCAACAGTATATAGTgatgcaaataaacaaatcctgctaaaatgtagaaagaaaaaagggacaaaaactCTAGAAAATGATATGGGGAGCTTCTGTGTAAAATATAGTCACAATTCGCTAGTCATAAAATCGCTTCCTTCAGTAGTTCTTTAGGAAAATGTTGCACCAGATTACCCAGACTGCATGGTTTATTCACATTTTATGTACCTGTCTGGTTACCTCATACAAtaaaaagcagtgtgtgtgataatctaatacaaatacataaggaatacaataatattattatattattcatcTACTCTCATACTGTTTCCTGTTCTGTACTTAACCAGtagttaaagttaaaaaaaaaaatctagattcAGTACAGTTTAGCCAACACACATTTGccaatacatttattatatgaaTTGTATGAGGAAATTGAGGAGGTGTGTGGGGGAGAAAAAGTGGTGAATGGTTTGTGAAATTTAAGTGCACTTTTGTTAAAATGTTAcccaaaataataaaacagtaatacGTTTTGGGGCTTTGTACATCTACAGCAAACATCGCAATACTTTTCTCACAGATAATCGATGACCGCAATTACAGTTACAAAGTTTTATTTTggcttgaggaaaaaaaaaaagagtgccaTCTAATTGCATATTATTCGTaaagtgtatttatataatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578094.1 lncRNA downstream 16195 14622036 ~ 14632753 (-) True LOC117597192
TU76369 lncRNA downstream 353249 14295494 ~ 14295699 (-) True G64461
TU76343 lncRNA downstream 395185 14250611 ~ 14253763 (-) True G64440
TU76336 lncRNA downstream 418120 14178574 ~ 14230828 (-) True G64434
TU76186 lncRNA downstream 607660 14040666 ~ 14041288 (-) True G64291
TU76798 lncRNA upstream 187551 14861924 ~ 14862199 (-) True G64860
TU76869 lncRNA upstream 292834 14967207 ~ 14968539 (-) True G64929
TU76907 lncRNA upstream 526925 15201298 ~ 15201545 (-) True G64964
TU77240 lncRNA upstream 1231721 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA upstream 1250081 15924454 ~ 15925161 (-) True G65260
XM_026936435.2 mRNA downstream 145119 14298897 ~ 14503829 (-) True pcxb
XM_034303617.1 mRNA downstream 428660 14157436 ~ 14220288 (-) False plcb3
XM_034303616.1 mRNA downstream 428662 14157436 ~ 14220286 (-) True plcb3
XM_026936270.2 mRNA downstream 428665 14157436 ~ 14220283 (-) False plcb3
XM_026936443.2 mRNA downstream 561967 14079705 ~ 14086981 (-) True cct7
XM_026935900.2 mRNA upstream 2070 14676443 ~ 14680843 (-) True rwdd
XM_026936639.2 mRNA upstream 99625 14773998 ~ 14809361 (-) False lrch4
XM_026936638.2 mRNA upstream 100336 14774709 ~ 14809362 (-) False lrch4
XM_026936637.2 mRNA upstream 100336 14774709 ~ 14809362 (-) True lrch4
XM_026935921.2 mRNA upstream 157391 14831764 ~ 14840438 (-) False pcolceb
TU76338 other downstream 405267 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 739591 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 740948 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 744927 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 1444486 13204273 ~ 13204462 (-) True LOC113540725
trnae-cuc_13 other upstream 60283 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1201454 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1205098 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1299206 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 1380649 16055022 ~ 16071692 (-) False acox3

Expression Profile