RNA id: XM_034303871.1


Basic Information

Item Value
RNA id XM_034303871.1
length 2330
RNA type mRNA
GC content 0.48
exon number 8
gene id dthd1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14875694 ~ 14893155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCACCAGAACCATGTCGGCGtggtgcagtgtagtgtgtagtgtggaaGCTACAGCATTCATCCGTTCCGCCTTCTTTCCGCGTTAGAAACCGCCCATAAACGCGAGCTTACCTGAGCCTGGGAAACTCAGGCTAGTCATATCCACAGGACGCCTCATGAAACAAGCACAGAAAACTAATTAAAACTGCTCTCTCAAAGTCCATCTCAGGTTTAACAGATTCAGCAAGATCTTCCTCCAAAGTTCTGTGCTATATAACTGCCCCCTGGAAGTCACAAAGATCATCACATGTAAATCAGTGGACGGCCTCAGCTCTCTCATGGTGTCCGGGTCAGAGGAGCTGGTCAGCAGCGTGCTCAGACTTGAAAACCTCAGCAACATGAAGTGTCCCTTCCCACTTACTGTAGCTGTACCTTTTCAAGCTTGTTACCGCCTGAATTACCGTGAGGCTGTGGTGAAAGTGGTGGACCAAGAGCAGAGGATCAGTTATGTCACTCCGCTAGCCACTGAGGGCATCTATGGAGGCCGCAGGGGTACGTTCGCAGTGGTGAGGGTGTACACTCTTGGAGTATTCGCAGTCTTATCCCGTTTGCAGAGGGAGACATTCACAATCCCAAAAAGAGGTCTGTGTCTCAAACTGAGGGTGGACTCCAGGATATGCCTAGACTATCCACCTGGATCTTTCAGCACACCGGTGGTTGCCCAAGCAATGGTGCAGCCTGTAGATGCTATGCTCTTGTCTTCATTGAAGTGCAGAAATGATTCCTGCCACTCCATCCTCACCACTAGCCCTCTACTGTATCTGAATCACCCGTTAACTGTGAGCCCTCTACGACCTTTGACCCTAACACTGCCCTGTCCTCCTAAACCTAAAAAaacaggagaggagaagagctGCACTTACTCTGATAGCACAACTCTCATGCCTGAAACCATCTCATCCCACCGGGTCAGGGTTTTAAGTGCATCAGTGAAGGCATCCAGAAAGCTGACTAAAGAGCAGCTGGTTGTCCTGGGCTGGAAAGATGAGCACTGGAATGTTCTGGATAAAGTCACTGTGAGGAACTTGCAGAATGACCTTGTTTCTTTTGAGGTCTTGCAGAACTATGAGAGGCTGATAGTACTTCGTCTGCTCTCTTCAGTAAAACCTTCTTGCTTGATGCTCTTTGCTGAGGAGCTGCAGGAGTCAGTGAGGACCTGTACAGTATCCATAGCCATCCACAAAAGTCAGAAGGACCCCAGCAGTGTGGTTCTGGCTATCCTGCCCAGTAGAGACCTGAGCTGGGGACTGGCTGAGCTCCATGCTCAGGCTTACTGTGGATCTCCAGAGCAATCTGCTGAGATATTGATGAGGGAGGGAGAGCAGCTGCTGCTAAAGTTCAGCGGCAACATTACCAGCGCAGGTGACCAGTGCACAGagcctcacacactcacattccaCAATCAGAGGAGGAATTGGCTCTGTCTGCAGCTGAAAGAACTGGACCCGTTTGGAAACTACAGCTCACCTTATTACAAAGGCACGGCTTTACTTTTCCAAATCCCTAAAGATCAGCTGGTATGGAGGGAAGACAAAGCAGTTATATCAGAAGACTATTGCTTAGGACAACCGGGCTGTAAGCTGTCACTCACTCTTCCAAAGACTGTGAAAACTCTATCTCGACCAATCAGTGCAAAATTCTTGCAGCATGATCAGACAGGTAAGAAGGAATATTCAAATCCACCCTCTCTACGAATTTTTATTCACCTTTATCCTCTTCTTCTGCCAGACCCACTCTGTGATGAGCTGCTAGCCTGGCTTTGTTGCGAGCTGTCCGAAGAAGATGCTTCCCTGCTGGTCATGTGCCTTCGCCTGCGCCGTTCATCTGTCCAGCTGGCCCGACTCCGAGCTCCAAACAGCCTCGCGCTGCAGATTTTCCACATCCTGACCACATGGAGACAAGCCCTGCCTTCCCTCACACCAAAATGTCCTTTGCTTGCCCACTGTCTGATTCGCATCGGCAGGCCAGAGCTTGCCGCAGAGCTGCTGAGAAAAGGTCCAGCTGTGGACAGGAGTGAGAGGAGAtgtgcagaaacacacattaCAATGTAATGGCCCTACATTACTTGAGGTTAAGGGGAACACATAAAGTATAAAGTGTAAGTATGTTTAGATATGAGCTCTAGATCTGAAAGATTAAGTTTATTCTGTTAATTCTCAGTTGGAGAGTCATTGAGCATTACAGAAATAGATACAACAGGTTTGTAAGAAGGATATCTGAATATGGGTTTGCGTTGCtgtgagagaaataaaagtacTGAtcaaatttcaattcaattcaattcaattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76798 lncRNA downstream 13496 14861924 ~ 14862199 (-) True G64860
XR_004578094.1 lncRNA downstream 242942 14622036 ~ 14632753 (-) True LOC117597192
TU76369 lncRNA downstream 579996 14295494 ~ 14295699 (-) True G64461
TU76343 lncRNA downstream 621932 14250611 ~ 14253763 (-) True G64440
TU76336 lncRNA downstream 644867 14178574 ~ 14230828 (-) True G64434
TU76869 lncRNA upstream 77818 14967207 ~ 14968539 (-) True G64929
TU76907 lncRNA upstream 311909 15201298 ~ 15201545 (-) True G64964
TU77240 lncRNA upstream 1016705 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA upstream 1035065 15924454 ~ 15925161 (-) True G65260
TU77256 lncRNA upstream 1092347 15981736 ~ 15982273 (-) True G65267
XM_026935919.2 mRNA downstream 1143 14841473 ~ 14874552 (-) True per1b
XM_026935921.2 mRNA downstream 35257 14831764 ~ 14840438 (-) False pcolceb
XM_026935920.2 mRNA downstream 35258 14831764 ~ 14840437 (-) True pcolceb
XM_026936638.2 mRNA downstream 66333 14774709 ~ 14809362 (-) False lrch4
XM_026936693.2 mRNA upstream 421240 15310629 ~ 15445772 (-) True pcdh7b
XM_026937207.2 mRNA upstream 936669 15826058 ~ 15875484 (-) True stim2b
XM_034304110.1 mRNA upstream 990082 15879471 ~ 15904267 (-) False tbc1d19
XM_026936113.2 mRNA upstream 990083 15879472 ~ 15904355 (-) True tbc1d19
XM_026936418.2 mRNA upstream 1029459 15918848 ~ 15963968 (-) False rbpjb
trnae-cuc_13 other downstream 140968 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 632014 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 966338 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 967695 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 971674 13903831 ~ 13904021 (-) True LOC113540713
trnap-ugg_2 other upstream 986438 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 990082 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1084190 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 1165633 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 1529921 16419310 ~ 16423164 (-) True tnfsf12

Expression Profile