RNA id: XM_026936700.2


Basic Information

Item Value
RNA id XM_026936700.2
length 5811
RNA type mRNA
GC content 0.50
exon number 13
gene id clcn5b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12125821 ~ 12148492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTTTGGACGCAGCCAGGCTGCTGTCAGGAAGGAAGTTATTGCGCGCTGTAAGTTAGTCAGTGTTCAGCCAGAGGATTTACCTGCAGGGGAACTACATTACATCCACGTGCTGCTGCTCTGCTTCACCTTACCTGCTGTAGTGAAAAGCCAGTGGATATGAAAATGAGACAGATCCACAGCTCTTCACTTCGTTAGTGGCGGAACTGTCAAGGGGGAAGAGGATTAGTGGCTCatcaacccacacacacacacacacacacacacacacagacacatagtATCACAAATCCGTATCACAAGACACGTTGTGTCTTAATGGCAGCTGAATCACTAGTGATCCTGTGACGCCTCTAAAGCCAGCACTTAAAGAAGGAGAGAAGATGGAGAACAGTGGCTTTTATAATGACAACTACAGCAGTGGAAGCAGTGATGATGACCTGGTCGACCTCAATGCCACTGCTCAGGATCTCCTCGAAGATCTGCCTTACGACGAGCAGGACAATGGCCAAGGCTACAGTCCAGGAGGCCGAGGACAGAATGGCACTGCTAAGCTGCTGGATCTGTTAGACGATGGGTTGCACAGGGTGGGAACGTACGATGATTTCAACACCATCGACTGGGTGAGGGAGAAATCCAAGGATCGAGACCGTCACAGAGAGatcagcaagaagaagaaggattCTGTCCTGGATCTTTTCTTGAGTGTGAGCGATGCTTTCTCTGGCTGGCTGCTCATGCTCCTCATCGGCCTCATGTCTGgagcATTAGCTGGAGGTATAGACATCGCAGCTCACTGGCTAACAGACCTGAAAGAGGGTCTGTGTCTGAATGGCTTCTGGTTCAACCACGAGCACTGCTGCTGGGACTCTAAAGAGACCACCTTCCAGGAGAGAGACAAATGTCCGCTCTGGAAGAGCTGGGCCGAGCTCACGGTGGGCGTCAGTGAGGGGGCGAGTGCCTATGTGGTGAACTATCTGATGTATGTGACCTGGGCTCTGCTCTTCTCCTACCTGGCTGTGGTCCTCGTCAGAGCCTTCGCCCCGTATGCCTGCGGCTCAGGAATCCCTGAGataAAGACCATCCTAAGTGGGTTTATAATCCGGGGCTACTTAGGAAAGTGGACTCTAGTGATAAAAACCATCACTCTGGTGCTAGCCGTGTCTTCAGGCCTCAGTCTGGGGAAAGAGGGCCCGCTGGTGCATGTGGCCTGCTGCTGCGGAAACATCTTGTGCCATCTTTTCACCAAATACCGCAAGAACGAGGCCAAGAGGAGGGAGGTCTTGTCAGCAGCCTCCGCAGTGGGCGTGTCTGTAGCGTTTGGAGCTCCTATAGGAGGAGTGCTCTTCAGTCTGGAAGAGGTCAGCTACTACTTCCCCTTAAAGACACTGTGGCGTTCATTCTTCGCTGCTCTGGTGGCCGCCTTCACCCTACGCTCCATCAATCCCTTTGGCAACAGCCGACTTGTCCTCTTCTACGTGGAGTTCCACACCCCATGGCACCTGCTGGAGCTCTTCCCTTTTGTTTTGCTTGGTATTTTCGGTGGCCTGTGGGGGGCTTTTTTCATCCGTGCCAACATGGCCTGGTGTAGACGGCGGAAGAACACGCGTCTGGGCCGCTACCCCGTGTTGGAGGTGGTGCTGGTGGCTCTGGCTACAGCGGTGTTGGCCTTTCCAAATGACTACACACGCATGAGCGGCAGCCATCTCATCTCCGAGCTGTTCAATGACTGCAGCCTGCTTGACTCCTCCCAGCTGTGTGACTACACCTCTCAAGTGAAGGGTGGAGCAATGAATGCTAACTTAAGTAGCGGCCTGTCTGACCGAGCAGCAGGGCCTGGAGTGTACACGGCCGTCTGGCAGCTGGCACTAGCACTTGTCTTTAAGACGCTGATCACTGTGGTTACGTTTGGCATGAAGGTGCCCTCTGGTCTCTTTATTCCCAGCATGGCAGTGGGGGCGATAGCAGGCAGGCTGCTGGGCATTGGCATGGAGCAGCTGGCATTCTACAACCACGACTGGTCCATCTTCAGAGGCTGTTCATCCAGCACCAAATGCATTACGCCAGGCCTCTACGCCATGCTGGGGGCTGCAGCATGTCTGGGTGGTGTAACTCGGATGACGGTGTCTCTGGTGGTCATCATGTTCGAGCTGACTGGAGGGCTGGAGTACATCGTGCCCCTCATGGCAGCCACTATGACCAGTAAGTGGGTGGCGGATGCGCTAGGCAGAGAGGGCATCTATGAGGCGCACATCCGGCTGAACGGCTACCCTTTCCTCGAGCCCAAGGAGGAGTTTGCGCACAAGACCCTGGCCATGGATGTAATGCGTCCACGGCGCTCTGATCCTCCACTTTCTGTCCTAACTCAGAGTGGCATGAGCGTGGAGCAGGTGGAGGCCGTGATAGCTGATACGTCATACAGCGGTTTCCCCATAGTCATGTCCCAGGAGAGTCAGAGGCTGGTGGGCTTTGTGCTGCGGAGGGACCTGGTTATATCAATAGAAAACGCACGGCTCTGCCAGGAGGGTATCGTGGGAGCATCGCAGGTCCTCTTCACAGAGCACACTCCGGCTCAGCCTCATGGTGGCCCTCCTCCACTCAATCTACGCAGCATCATGGACCTCAGTCCACTAGCCATCACTGACCACACACCCATGGACATCACAGTGGACATCTTCCGCAAGCTCGGTCTACGCCAGTGCCTCGTCACACAGAATGGGCGTTTGTTGGGGATTATCACTAAGAAGGACATTTTGAAGCACATGGCCCAGATGACAAACAGAGACCCTGAGTCCATCCTTTTCAACTGAGAATCCTTTCCACACCACTCAGCAGGAGAGACATTAAATCCCATTCCATCACATGGACACACTTCCCAGACTGGATCTTCCCAATTACCTggtggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagggaTTTTTTGTGTGAATGACCTGAGGCTTTGTGTAGTTGGAGAAGCAGATTTGGACAACTTGCCTGAACGGGAAGTCTTGTCTGCTAGAGGATCTGACTCTACAGCTTCCCCTGAAGCTGTCACACACTCCACTGCtgacaactgcacacacacacgcacacatgcacacacacacacacacacacacacacgcaccactGATCCACATCTTCCTCAGAACACTGTCACAAAAACATTCCTGTGGACACTGACTTGGGCTTTTTTTAAGCCTGCATGCCTCAGTCCTGGATTCTTTTTGAGGGAAGTCATGGCAGGTGAAGGGCATTTTGGGAATGTCATGCATTTGGttgcactctctctccctctccctctctcactctagCTGACATGCCTGAACTTGCCCAGGTCAGACAATCACTGTGGGAAGTGGATGAGAGATGAGACAAGAGTGTATCATGTTAAAAAGTCACACACTCTGTCTTCCTCACACTCAGCCAGCCTGTCAGATGCTCACGCAGATAAAAGCCAGCCAAAGACAGTGTTATGTTAGAGCTTTGTGGAATTGAAGTGTTAATTTAAAGTGTCAGCGTCTGAATGTTAACATATGAACGTGACTTGAAATTGAGCAGCTGTAGCTGTTATGAATGTTGAAGGGAATTATTTAAGCCACTGTGGTCAACTTATATGTTTACATAATTCATAAAGAGCTCTTGATGAGATACTCTAGGATCTCTTAGCACCATTTGGATTTTTCTGCCATTTAGCTCAGATTATTTTACAAAGTTGGTCAGTTTGTCTAAAAtgtattaactttttttttcctgagtcaGTATGTCCTGCAATATCCTTTAGATCAGGTATGCATATGTTGGGAGTTCTACCACTTTGTAGCAAAGTATACTGGAGAACATTCCTCGCACTGCAGGTTAGTGTCCAAACAAGCAGCcacagaatacccataatgcatttctCAGGTTGTAGGGACACCAGTTTAGACATGGGGGTTCACCATGTGTTGTCTTCCCCTGCCCAGGCCAGTAGAGGTCActatctctctcactatctcatACAGCTGCACTGTGATTATTCTGATCCGTTTTGGCCAGCTCTCCTTCTTTTCTCATGACTGCTCACGTGCCCTTGCATTAGGGAGTTAATATCACCGTCTCACTCCTAGAGAACTGAAGTTGAAGGGAGTTGAAGTTCTTCCCTTCTGCGCCGCTTTTCTTCCTGTGCTGCGATCTGAGCGTGATCGTCTCATCTTGGGTGTATCCTCCGTCCTCTGTTTATCTCGCTTGTATTCATTATGACCCTGGACAACCTCGGTTGAGCATCATGTCTTTCCGTTCCCTCCTGTTGTTTTAGCAGTTGTGACAATCCAATAATGACATTAGAGGAGGCTCCTCCTAAAGGAAGCACAGGCGGAGTGCGGGAGAGCTCCCTGTCATTTATTTACTCTACTCCCCATCCTCGGCACGCTCACGCCACTTCTATTGTACTCGCGTGTTTATCTACCTTAACACAATGTTAAAAGCATGTTAGTCCTTTCAAATGCATTCTGAGGCCActtctactctctctctcacactctctttctttccctaaTATTCCCGCGAGCAGGAGCGAGGGCACGGAGGTCGGAGGAGCTATTGTTCCTGCTCATGCTCGTCTGGGCTAGTGGTCGCCAGGATGTTCCCCGACGGCGTTTCCCTGCCGCCCGGCCCTCTTCCACTCTTAGAGAGCCAATTTCCGTCCAACAACAGCCAATTCTGcattattgtaatataataGAGGCGAGGAACGAAACGATCTCTGCCTCCGCTGATTGaaagtaaatgtttgtgtgtgtgcatgcaaggTGCGCAGGAACGAGGGATTAATCCTTTCTTATCTGACCCCCTGAGAAAACAAGGCGAGCGTTGCTGGGAGAGGCTGGAGAGGAGGTTAATTAAACAGTGTGGCTGGGTCACTTTCACAAAGGTCCCTTTTTGTGGCATCAGGGTtatgagcaagagagagagagagacaaagagaaagagagagagatttggcTAGAAGGAGGCTTGCTCATTGCTGCTGGGTTACCGAGTGTCCCAGCTCTCTGCTGTAATCCAACCCTTGATTGGCTTTAAGGGCTCAGTCCAGGGCTGAATGAAATGTCATCTAGAGCAGGACATGCCACAGACCAAGCCCCCTTCCCCCTTCTCTCCTCCGTGTTCCTTATCTGCAGAAAGCCACACACCACCCTGTGGAAGAATGCTCGAGTTAGTGCTTTATCCAGCTGTGATTATTAACCACCTGCCAAAAAACGGCTTTTGTATAACAAATGTGCCATTCAAACCCAGGAAgacaaacaagaaagaaaaaaaaagcatgcagcTGAAAGGCATTTGTTCGAAAAGGCGCCTGTTTTTGCTAAGAGAGTAGAAATGACAGGTGGAGGCATGGCAAATGAATTGTTGTTACAAACACAAGACCAAATTCTTCTGTGTTGCCTCTGAGATGCAAAAGATGCAGACTCTGGTGTGAACAGCATGACTCCACCCTGCAGATGGATAACACCTCTCAGAGTTACTGGACCATCAGTAGGTTTGTTTTATCCATGCACACGCTGAACACAACCTGCTTCCCATCAGAGCACTAACACTGTTTCAGTTTAAAGGAGATTGAGAACATCGAGACCTCACCATGATCACAGTAGTATTATTCTTGAAGGTCAATATAATGCAGTCATTAGGACCTTTAAACAAAATGGAtctgtaactttatttattttgtaaaatgctGACTCTGCACTGTGGAACTTGTAATCAAAGGTGTAATTTGTTTTTTGCGGAAATTTGTTTGAATAAATGTGAAGCATTTCAA

Function

GO: NA

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74852 lncRNA downstream 2811 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 121502 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 152874 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 158925 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 227720 11897845 ~ 11898101 (-) True G63031
TU74905 lncRNA upstream 123880 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 176968 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 205900 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 336382 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 518949 12667441 ~ 12670500 (-) True G63502
XM_026936942.2 mRNA downstream 42610 12069043 ~ 12083211 (-) False ccnb3
XM_034303349.1 mRNA downstream 42610 12069043 ~ 12083211 (-) True ccnb3
XM_034303931.1 mRNA downstream 158918 11862625 ~ 11966903 (-) False htr2cl1
XM_034303930.1 mRNA downstream 158918 11862625 ~ 11966903 (-) False htr2cl1
XM_026937220.2 mRNA downstream 158918 11862625 ~ 11966903 (-) False htr2cl1
XM_026936673.2 mRNA upstream 1927 12150419 ~ 12168101 (-) True pygmb
XM_026936372.2 mRNA upstream 22033 12170525 ~ 12182262 (-) True sf1
XM_026937265.2 mRNA upstream 37032 12185524 ~ 12189447 (-) False rbm4.1
XM_026937264.2 mRNA upstream 37032 12185524 ~ 12189279 (-) True rbm4.1
XM_026936296.2 mRNA upstream 42330 12190822 ~ 12194683 (-) False LOC113540082
TU74378 other downstream 590808 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 911399 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 912887 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 916988 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 943508 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 98782 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 123726 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 123880 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 123880 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1055781 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile