RNA id: XM_026936706.2


Basic Information

Item Value
RNA id XM_026936706.2
length 1618
RNA type mRNA
GC content 0.46
exon number 11
gene id fam49ba
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23758384 ~ 23782113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATTGAGGCGGGCTGTTTGCGGTGTTGAGCAGTGAGCGGAGTATGCTAATTTCCTGCACTTCCCCTCTCTAAATCAATGCCTTTTATAGGCAGGACTGCCTTTTAGAGTTGCGCCTGCCTTGTGTCACTCACCAACCTGTGCTTCTTACATAAAATATAGCCCAGAGCTGATCATCCAGCAACCCGGAACATGGAGGCGCAGCTCCTCTTCAGCATGAGCAGCTGAGTTCACACCGTCTGCACTTTTCTCAAGACGTTTGCTCAAAGTTGAAGGTTTCTGATTGGACGGCATGGGGAATCTGATCAAGGTTCTGACGAGGGACATCGACAACAATGCGGGGAACTTTTTCCTGGACTTTGAAAATGCTCAGCCCACTGAGGCAGAGAGGGAGTTATGGGAACAGGTGAACAAGGTTCTGATGGAGGCCATGAGTGTTTTAGAGGATCTGCAGTCCTACAGTGGAGCTGGAGAAGCCATTAGACAGGCCATCCAGCAGCCGTCTAATGAAAGTGTGCAAGAGAAAGCCTGGACTGCTGTGGTGCCGCTAGTGGGCAAACTAAAGAAGTTTTACGAGTTCTCTCTAAAGCTGGAAGGTGCCCTGCATGGCCTGCTGGGATTCCTAACGAGTGCACGCTGCAGCCCCACACAGCACTTGGAGCAGGAGCAGGCTCTGGCACGCCAATTCGCAGAGATCCTCCACTTCACTCTGCGCTTCGATGAGCTCAAGATGACTAATCCAGCCATTCAGAACGACTTCAGCTACTACCGCCGGACCCTGAGCCGCATGCGAATCAACAACTTGGCAacagaggaagagaacgAAGTAAACAACGAACTGGCCAATCGCATGTCTCTGTTCTATGCCAATGCTACACCAATGCTGAAAACATTAAGTGATGCCACAACGAAGTTTGTATCTGAGAATTCAGATTTACCCATagaaaacacaacagactgCCTAAGTACGATGgcaagtgtgtgtaaagtcaTGTTAGACACACCGGAGTACCGTAGCCGTTTTGCGAGTGACGACACAGTGTTATTCTGCCTCCGTGTGATGGTGGGAGTCATCATCCTCTACGACTACGTCCATCCTGCTGGAGCTTTTGTCAAGTCCTCAAaaattgatATGAAAGGATGCATTAAAGTCCTGCGGGATCAGCCACCTAACAGAGTAGAAGGTCTCCTTAATGCGCTCAGGTACACGACAAAACATTTGAATGATGAGACTACCTCCAAGCAAATCAAAAACATGTTACAAGTCTGACAGCATCCACAAAACGGTACTTTTTGGAACCTGATGAGGATTTCAGCGCTCTTCTGATGAGACTGCTTTAGTGGGAGTTTTTAAATACAGAGAAAATGGCCATGTGTCAGGTGGCAGCTATCAGGATACACTGCTGTATGATGTGCTTAATGCAACTCAGAAAAGGAGCTCCTCtgtcctttcttttttaaaaattgttttattgcccctgtgtatttttttttaatggttgaCAGAGTGCCAAGGCAGAAACAAATATCTGTTTATGTAATTTCATTGTTAAATGATGgttgttttgattgttttgataactctttttaacaaaataaagaagCTGTTTAAATCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82692 lncRNA downstream 106518 23651051 ~ 23651866 (-) True G69691
TU82643 lncRNA downstream 163840 23594331 ~ 23594544 (-) True G69649
TU82581 lncRNA downstream 304163 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA downstream 304180 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA downstream 304180 23453340 ~ 23454204 (-) False LOC113540115
TU82956 lncRNA upstream 139993 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 149220 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 356180 24138293 ~ 24138492 (-) True G70025
TU83095 lncRNA upstream 363465 24145578 ~ 24145784 (-) True G70026
TU83096 lncRNA upstream 363777 24145890 ~ 24146241 (-) True G70027
XM_026936998.2 mRNA downstream 174888 23547170 ~ 23583496 (-) True amph
XM_034304072.1 mRNA downstream 174889 23547170 ~ 23583495 (-) False amph
XM_026936999.2 mRNA downstream 174889 23547170 ~ 23583495 (-) False amph
XM_026936182.2 mRNA downstream 213652 23537428 ~ 23544732 (-) True LOC113540016
XM_034303623.1 mRNA downstream 253203 23466417 ~ 23505181 (-) False LOC113540113
XM_026936883.2 mRNA upstream 1985 23784098 ~ 23843304 (-) False asap1a
XM_034303743.1 mRNA upstream 1985 23784098 ~ 23843304 (-) True asap1a
XM_026936885.2 mRNA upstream 1985 23784098 ~ 23843302 (-) False asap1a
XM_026936886.2 mRNA upstream 1985 23784098 ~ 23842701 (-) False asap1a
XM_034303745.1 mRNA upstream 1985 23784098 ~ 23822843 (-) False asap1a
LOC117597117 other downstream 226368 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 240714 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 242025 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 243449 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 244345 23513456 ~ 23514039 (-) True LOC113540012
XR_003404116.1 other upstream 254605 24036718 ~ 24036854 (-) True LOC113540746
TU83344 other upstream 522261 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2591645 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2689967 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2754989 26537102 ~ 26551030 (-) False G71596

Expression Profile