RNA id: XM_026936722.2


Basic Information

Item Value
RNA id XM_026936722.2
length 2102
RNA type mRNA
GC content 0.50
exon number 12
gene id nsun6
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21917213 ~ 21933593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAACCAGCTTATACAAATGGCGGCGGAAAACACCAGGGAGCGaggataaatattttatttataattatttttggcttaatgttttatttatagctaGAAACAGCTGCAGAAGTCACAGAATATATGCTCTATTTCCCCAACGATACTTTATTCCATCTCGCATAGAAGACTTTAGGGTTAGTGGCCGTTAGCGTATGTAGGTAACCTAGCAACGTGGTGACGCATGCTGCCTTCGGGGTCCGTCTCAAACCGTTTCATTAAAGGTAGCTTCGCAGATATCGAAGCGCTGCCTTATAAGACAGTTATGAAACAGCAAGGCACCAAAGGAATCAAGGCAGCTGTCTTCGGACACGGCTGTCCATGATGTCTGAGATAAACAGGAGTGTTTTCCCACAGATAGCCTTAAGGTCTGAAATGCAGGAATATCTTCACAATGTCTACACGAACAAAGAGcTCGTGTCTGAACTCGGAAAGGAGGAGGCAGAGAAAGTGTTTGATTCACTGCTGTCCTGTCTGTCCCACCCGCCATCACTCACCTGCCTGAGAgccagcacacacatacacactctacagGACATAGAACACAGGCTGGAGCAGCACCTTgcacagCAACAAGTGAGTGGTTGTTACAGTGACAGGGTTTCCACTCCCATCCTTCCTCACCCACAGCTTCCAGACGTGCTGCTGCTGCCAGTCATAGGGCCGAGGGATGTGAGTATTCTGAATGCTGAAGTGATCGTCGGTGCACAGTGTGGCAGTGCGGTATTGAGAGGAGCTCATGTCTTTGCTCCGGGTGTCCTCAGTGCACCTAAGTTTATGAAAGCAGGTGACGTAGTGTCAGTGTTCTCAGATGCGGAGGGCAGGTGTACACGAGGAGCTAAAGACTTCCAGGGGAAGAAGGTCTTCCTGGGGAATGGCGTGTGTGTGATGAACCGTTCTGATATATTTTGTGCAGAAGGACCAGTGAGAGGTGTGGCCATTAAGATGGTGGATGCTCTTTACCAAAGCCCATCTTTTGATGGCGTGCTGCCAAATGAAGTGTTCCTGCAGAACCTCCCATCAGTGGTGGTGGGACATGTTTTGGGGCCTCGTCCTGGGGAGAGGATTTTGGACATGTGTGCAGCTCCTGGAGGAAAGACTACACATATAGCTGCTCTCATGGCTAATCAGGGAGTGGTAGTGGCTCTGGACAAGATCAAATCCAAAGTAGAGAAGATCACTGAGAATGCTCAAGCTCTAAGGCTGCACTGCATTAAAGCGCACTGTTACAACAGCATACAGGCCGTCTGCTCTGATCTTACCCACAGCTGTAGTACAGCAGACACTCCTCCATTCCCAGAAGAGAGTTTTGATCGGATATTATTAGACGCTCCATGCAGTGGGCTGGGACAGAGACCTAACATGGCACTCAACTACAGTCTCAAGGAAGTGTGCTCATACCAGCCTTTACAGAGAAAACTCTTCCGCACGgctgTGCAGCTCTTGAAAAAGGGAGGTGTGTTGGTGTATAGTACCTGCACTGTAACACTTGCTGAGAATGAAGAGCAGGTGGCCTGGGCATTGAAAACGTTCCCGTGTTTAACTCTGGAGCCACAGgagcCACACCTTGGATCACAAGGCATGCCTGGAGCTGAATTATCATGTGACCAGCGGAGGCTGCTGCAGAGGTTCCGCCCAGAATTATCATGGCACAGGGCTACTGAGAGTCACGCCTCGGAGGACCTCCTGCTAAAAGCCAACACGGACACTATCGGGTTCTTCATAGCAAAATTCAGCAAGAGATAACGCCCGTTCATTCTAACACGTGTTCATGAAGCAGCTCAAGGAGGCAGACGGAAACGAGTGCCAGGGGAGGGAGGGGTAAACGGATGGCATGAATGGAGGGGAGAGAAGGGGTGGTGCCATGCGTAGTTCTGCTTCCGTTGCCATGACAACAGTGACGCAACGGCTGCTATGGTGATTGTTGGGTTTGCGTGACCATTGGACTGTGACCAGGAAGCAGCATGCAGCCAGAGGACACGATGGTATTGAcagtttctcacacacacagcaaatgaCTGGCAGCTGAATTTGTTAATCAACAGATGTGAgcactgtaca

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21971 NSUN6; methyltransferase NSUN6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81571 lncRNA downstream 70485 21846385 ~ 21846728 (-) True G68752
XR_004578020.1 lncRNA downstream 73632 21840481 ~ 21843581 (-) True LOC117597088
TU81563 lncRNA downstream 81218 21835770 ~ 21835995 (-) True G68744
TU81562 lncRNA downstream 81787 21835222 ~ 21835426 (-) True G68743
TU81560 lncRNA downstream 86571 21830076 ~ 21830642 (-) True G68741
TU81577 lncRNA upstream 12270 21945612 ~ 21946237 (-) True G68758
TU81734 lncRNA upstream 236738 22170080 ~ 22173974 (-) True G68907
TU81751 lncRNA upstream 254841 22188183 ~ 22188763 (-) True G68923
TU81994 lncRNA upstream 445953 22379295 ~ 22379533 (-) True G69124
TU82001 lncRNA upstream 476261 22409603 ~ 22452697 (-) True G69128
XM_026936531.2 mRNA downstream 131838 21777876 ~ 21785375 (-) True hacd1
XM_026936823.2 mRNA downstream 159486 21748835 ~ 21757727 (-) True tyms
XM_034303776.1 mRNA downstream 181455 21730619 ~ 21735758 (-) True adcyap1a
XM_026936085.2 mRNA downstream 181472 21730195 ~ 21735741 (-) False adcyap1a
XM_026936632.2 mRNA downstream 293581 21582222 ~ 21623632 (-) True smchd1
XM_026937223.2 mRNA upstream 311888 22245230 ~ 22252384 (-) True chpf2
XM_026937013.2 mRNA upstream 384123 22317465 ~ 22326808 (-) True garem
XM_026936957.2 mRNA upstream 405411 22338753 ~ 22345651 (-) True dph2
XM_034303790.1 mRNA upstream 405411 22338753 ~ 22345604 (-) False dph2
XM_026936140.2 mRNA upstream 412593 22345935 ~ 22354576 (-) True mcur1
trnaa-ugc other downstream 498974 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 546203 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 546203 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 546209 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 587963 21326046 ~ 21329250 (-) False G68462
TU81579 other upstream 1184 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 698843 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1360609 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1546623 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1546710 23480052 ~ 23480566 (-) False LOC117597073

Expression Profile