RNA id: XM_026936854.2


Basic Information

Item Value
RNA id XM_026936854.2
length 4189
RNA type mRNA
GC content 0.47
exon number 16
gene id prpf4ba
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24148572 ~ 24161793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGTTTGCCGTTTCCTCACCTACTGCGCATGCGCGCAATGAACCTGCTCTAGTTTCGTTTAGCCGAAGTTGCTACTGCTAAAGATGGAAACCATGATTAACGACGCTGTAAACCATTTCGCAAGTGGCAATGCATCaagtgaagaagaagagaatAGACTCGGGACTTGTAAGGACAGTGACAGCATGGAGAAACACAGGcgaaagaaacacaaacatcacagcaagcacagaaaacacaaatattcatCACTGGAGGAAAAGGAACACAGACACAAGCACAGACACAAGCATAAAAAGCGCAGACACCGAGATTCCTCCAGGATGGATGACGGGAACATCGAGGACACAGATGAAATAGTGTCACTGAAGAGGTCCAGATTGGATGACCTGGCAGCCCTGGAGGATTTAGAAAAGCAAAGGGCCCTGATCCAAGCAGAGCTCGATAATGAGCTGATGGAGGGAAGGGTGCACTCAGGAATGGGCCTGATACTGCAGGGATATAACTCGGGCTCAGATGAGGACACGGAGGTGCAGGAGCGGATATGTAATGGGGATGAGCAGAGGGAGAATCTAGAGCCGCTTTGTATGGCTGGGGGACAAGAAAGCCAATCGGTTGCTAAAGATGCAGAACAGAGTCAGCACAGCTCCATGGACGATGAGAGACAGGATCCTTGGCGGCGTAGCAGAAGCAGGTCTGAAGAAAAGACAATCAACCAACATAAATCAGATAGAAGAAAGAGTAGAACTGAGTCAGATACAGATGACAAGGACAGAACTCAAGGTCCATGCCCGACTTTAGAGAAGAGACCATCCTATAACATTCAGCAGCCCAAAGATGGACGTCCAAGGTCCAGATCTCCTGCGATATCCAAGAAACAGAATAATACGCACAAGGATCCCCATTCAGTTTCTGCAGAGACAGAACAGGGAAGTAAAAGAGACCCTTCATCTTCATTTCGTCAACCTGGGACTAGAAGTACCGACCATTCCAAATCACCAGAGAAGGCAAGACGCTCCAGATCAAAAGAAAGACATAGCAGATTACCTGAGCCTGAACGCAAGCGGGACAGGGACAAGACATCAGTCAAGTCTCCTTGTAAGGAGGTCTCTTCAGGCAAGGAGAACAGATCTCCCCACAGAAGGCACATCCATAGTCCAATACGGGATAGAGCTTCTCGCAGGAGCAGGGAACGCCATTCTCCTCAACAGCCTTCCAACTGCCGCTCCGCCACCCGTAACAGATCTCCAGCCAGAAGAGAACGATCTCGCTCCACTGATAGAAGATGGCGAGAATCCGACCGTCAGAGACTCTCACCAGTCAGGATGCGGTCCCGTGATGATGCAGCCAGTTGCAGCGGGCCGAGTCCCTCTCTCAGCTCCAGAGGGAGGCCGAGCCGCTCCCCCAGGAGACGCACCAGCAGATCTCCTCTTCCCAGACGAAGGTCTGTGGAACGGGCCAGGCTGGGCCACAGGCAGCAGGCACGCTCAGGATCTCAGGAAAGGAAgaggagaagcagagagaaGGATGATAAGTTTAAGGGCAGTCTGTCTGAAGGCATGAAAGCCGAGCAGGATGAATCAGATGAAGAAGTTTTGGAGGATTATGATGtggatgaagaggatgaggaagcACTGATAGAGCAGAGGAGACTCCAGCGCTTGGCAATTGTGCAGAAATATAAGGAATCAAATGAGGACAACAGTAAGTCAGAGCCTGGCAGTCCTCAGAGTAGCTCCCACAGCCGCTCGCCCTCTCCGGATGATGTTCTAGAGCGAGTTGCAGCTGATGTAAAGGCTTACGAGCAAGAGAACCTGGACACCTTCGAGGCCAACATTAAGGCAAAACACAATCTGCTCACCCAGGAAAAAGATGgaggTAATTCAAAGAAGCAATCAGCTCCTGACATGTTCACGGAGTCAGATGACATGTTTGCTGCATACTTTGACAGTGCAAGGTTGCGTGCAGCAGGCATTGGGAAGGACTTTAAGGAGAACCCCAGTCTCAAGGACAACTGGACAGATGCTGAGGGCTATTATCGGGTGAACATCGGAGAGATGTTGGACAAACGATATGACGTTTATGGCTACACTGGGCAgggtgtgttcagtaatgttaTCCGTGCAAGGGATCTGGCCCGAGCTGGTCAAGAAGTTGCTGTGAAAATCATACGCAACAATGAGCTCATGCAGAAGACAGGCCTTAAAGAGCTGGAGTTCCTGAAGAAGCTGAATGATGCAGACCCTGATGATAAATTCCACTGTGTGCGTCTGTTCAGGCACTTCTATCACAAGCAGCACCTGTGTTTGGTGTTCGAGCCACTCAGTATGAACCTGCGGGAGGTCTTGAAGAAGTATGGCAAAGATGTGGGGCTCCACATCAAGGCAGTGCGCTCCTACAGCCAGCAGCTCTTTCTAGCCCTCAAACTCCTCAAGCGCTGCAACATCCTTCATGCTGACATCAAACCCGACAACATCCTGGTGAATGAGTCTAAGACCATACTGAAGCTCTGTGACTTTGGCTCCGCATCCCACATTGCTGAGAATGACATCACGCCCTACTTGGTCAGCCGGTTCTACAGAGCACCTGAGATCATCATTGGAAAGCCATATGATTATGGAATTGACATGTGGTCTGTGGGTTGCACGCTGTACGAGCTGTACACAGGGAAGATCCTCTTCCCTGGGAAGACCAACAACCACATGCTGAAACTTGCTATGGACCTTAAAGGGAAAATGCCCAACAAGATGATCAGGAAAGGCTTGTTCAAGGACCAACACTTTGATCAAAACTTGAACTTCTTGTATACAGAGGTAGATAAAGTTACTGAACGGGAGAAAGTGACCGTGATGAGCAGCATCAACCCCACTAAGGACCTACTGAACGACATGGTTGGTCGTCAGAGACTCCCAGAGGACCAGCGAAAGAAAGTGGTTCAGCTGAAAGACCTTCTGGATCAGATTCTGGTGCTCGACCCAGCCAAGCGGATCAGCATCAACCAGGCCCTGCAGCATCCCTACATCCAGGAGAGGATGTGACTGTCGGACCCACACTTCTGGGGATACACAGCACGAATCTTTCAAAAGTCTGCCAACAAAGTGACGGTCTTGTATGTGCAGGCATGACTGAATAGATGAAGAGACATTTTAATGTCtaagtaaagtttaaaaaaaaaatttttttttttcttttttcctttggcTTTCTGAACACACATTATCTtgctttcattttgaaatgtatgATGCCCTGATAAAGATGtgccccaccccaccccaccccacaaACACTagcttaaaacttatttttttttttttattcttgctATAATTGATACAATCTGAAAGCAGCAAaaattactgtatgtgtgctGGTGTTCCAATAGTCTGAGCCTCCCCTAACACTGTATGTGATAATGTGAGTTCAGGATAAATGCAGTCTATATCCGCATCTCCCTCAGGTGCTAGAGCGACAGCGCCCACTGGTGCACGGGCCTGTAGGTGTGCGTCTGCTGAAATCGGAGCTCTTGAGCCCTACCTGAGCCTGTCTGCAGGGAAGGCCTCCTCTGTAAAGGCAGGTTGTGTTCCTCTAACAGTACACTGAAGAGACGAGGAATGGTCTAAACCCATCATCCTTCAACAGAGCCAAAGTTAATTCCTAAAAAGCAAAGTTCTTGCATAAACAAGTCGGGAAAGGAATTCCAAGACAGTCACTATTGCTGTTAAGGGTAAGGGAAAAGGGGCAGTCTGAAATATTTGAATTGAACAGGCACCTTCAGTGTACTGCCTCTGACAGTAATGTATTGTTCAAAAGCAATGTCTGTGACTCTCAGTTGATATGCATTTGTTCTACCTAATGTTCTCACAAGGGGTGCATGTATTCTGAAATGCTGTGCACTTTGTTGTGTACTTCTGCCAGTGTTCCTTTGTTCTGACGTGATCGTGTTGTCTTTTGATACAGGGATATTCCTCATCTGCTCTATGAATCTGCTTGTTTTGAGCGGTAATTGATTCTTTACTTCATATTGCTTTATTGTTCTAATTAAGACACAGAACTAGCTCATTCACCTTGTATATTATCCATACCTCGCCTGCATGTTAAAAAATAGTTTGCATAATTGTAAATTTATAATTGTATGTTATCATAAAAcagtctaaaataaaaatgtttgatgtggagaaaaagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83096 lncRNA downstream 4131 24145890 ~ 24146241 (-) True G70027
TU83095 lncRNA downstream 4588 24145578 ~ 24145784 (-) True G70026
TU83094 lncRNA downstream 11880 24138293 ~ 24138492 (-) True G70025
XR_004578012.1 lncRNA downstream 218137 23931333 ~ 23932235 (-) True LOC117597086
TU82956 lncRNA downstream 227834 23922106 ~ 23922538 (-) True G69916
TU83122 lncRNA upstream 17238 24179031 ~ 24179864 (-) True G70044
TU83444 lncRNA upstream 404408 24566201 ~ 24566511 (-) False ccdc24
TU83664 lncRNA upstream 710837 24872630 ~ 24872833 (-) True G70540
TU84048 lncRNA upstream 1247921 25409714 ~ 25445048 (-) True G70906
TU84116 lncRNA upstream 1391284 25553077 ~ 25554229 (-) True G70970
XM_026936857.2 mRNA downstream 5346 24139799 ~ 24145026 (-) True LOC113540393
XM_034304058.1 mRNA downstream 34949 24110472 ~ 24115423 (-) False bfsp2
XM_026937208.2 mRNA downstream 34949 24110472 ~ 24115423 (-) True bfsp2
XM_026936941.2 mRNA downstream 66090 24045734 ~ 24084282 (-) True nrbp2a
XM_034303976.1 mRNA downstream 109027 24029784 ~ 24041345 (-) False puf60a
XM_026936541.2 mRNA upstream 403948 24565741 ~ 24586048 (-) True ccdc24
XM_026936542.2 mRNA upstream 403948 24565741 ~ 24585947 (-) False ccdc24
XM_026937068.2 mRNA upstream 440077 24601870 ~ 24740260 (-) True b4galt2
XM_026937077.2 mRNA upstream 586308 24748101 ~ 24755113 (-) True atp6v0b
XM_026936660.2 mRNA upstream 721953 24883746 ~ 24911790 (-) True ptch2
XR_003404116.1 other downstream 113518 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 618356 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 632702 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 634013 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 635437 23514374 ~ 23514935 (-) True LOC117597116
TU83344 other upstream 142581 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2211965 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2310287 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2375309 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 2934809 27096602 ~ 27100858 (-) True G71832

Expression Profile