RNA id: XM_034303657.1


Basic Information

Item Value
RNA id XM_034303657.1
length 4729
RNA type mRNA
GC content 0.42
exon number 31
gene id nsmaf
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21168890 ~ 21188778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagagagagagaacgagctAGAGTATTGTTCTTTTACAGAGGCGTTTGCTAGTTCCGGCAGTTGTGTTTCTGAGCTGAGGGtcgctctctgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgcgtgtgcgtgtgcgcgcgctcTGAGCCTTGAGTGTCCCCCGGTGCACGATGGCGTTCATCAGGAAAAAGGAGCGCTGTAAAGAGAGGTTTTCACTGCTGTTACTAGACCTGGAGGAATATTATTTTGAGCAGCACACTGCATATTGGGTGGCTGCTCTCCCGAACAGAAATATTCGAGGCTCACTAAAGATCTGTTCCAAATCAGTCATTTTTGAGCCAGATGAGATGATTGAGCCTATTTTAAAGatCCCACTGAAAGACTGCAGGCGGATAGAAGCAGTGGAGATGAATGAGTCCAATCCTTTTAAAGAAACCAAGCCTGCATCTGTACTTATTGAAACCAAACAGGTTTTTCTTATTAAAGAGGGGAATGTTGTTGCTCCATACAAATATGAAAGGGGAGAAAGAAGTGTCAGATTCCAGCTGGTGATGCCCACAAAAACAGAAGATGTTGTCCAGACATTGCTGCAGTTACATAGAGCATCATGTCTGGACAGGCTGGGGGACCAGACAGCCATGATTGCTGCAAACTTGCAATCCAGGTTGGCGAGAACATCTTTTGATAAGAACAGctttcAGAGTGTGTCTGAGCGGCCACATATGGAGTGTAAGGCTGAGATGGTGACCCCTCTGGTGACCAACCCTGGCCACGTCTGCATCACAGACCACAACCTGTACTTCCAGCCCCTTAATGGTTACCCTGATTCAGTTGTGCACATTGGGCTCCACAGCGTCCGGCGCATCTACAAAAGAAGACATGGCCTGAGACCGctggggcTGGAGGTGTTTTGCACAGAGAATGATCTGTGTTCAGATATCTACCTAAAGTTCTACAATACTGAAGACAGGGATGAACTTTACTACTACATTGGCACTTTCCTAGaaaaCCACATAGCGGAGCACACAGCGGAGAGTTACATGCTGCACTGGCAGAGAGGCCACATCTCCAACTACCAGTACCTGCTGCACCTTAACAACCTGGCAGACCGCAGCGTTAACGACCTCTCACAGTACCCCGTGTTTCCTTGGGTCCTCAGCGACTACACTAGCCCACAACTGGATCTGTTGAACCCTGCCTCTTTTCGGGACCTCAGTAAACCTGTGGGAGctttaaacagagagagactggaaaGGCTACTGGAGCGTTACAAGGACATGCCTGAACCACGTTTCATGTATGGTAGTCATTACTCCTCTCCTGGATACGTCCTTTTCTACCTTGTGAGAGTGGCTCCAGAGCACATGCTGTGTTTGCAGAACGGCCGTTATGACCATGCCGACCGAATGTTCAACAGtaTTGGAGATACCTGGAAGAACTGCTTAGAGGGAGGTACTGACTTTAAAGAGttgaTTCCTGAGTTCTATGGCACAGACTGCAGTTTTCTGAAGAACATGCTGGGCTTAAATCTGGGTCGGAGGCAGGGTGGTGGGCGAGTAGGAGATGTGGAACTTCCTCCCTGGGCCACAGatatggAAGACTTTCTGCAGAAGATGCGCTCTGCATTGGAGAGTCAGTATGTGTCAGAGCACTTGCACGAGTGGATTGATTTGATCTTTGGTTACAAACAGAGAGGGAGTGAAGCTGTTGCAGCCCACAAtgTTTTTCATCCATTAACATATGAGGGTGGCATCGACTGTGACAGTATTGAGGACCCAGATCAGAAGATAGCGATGCTAACACAGATTCTGGAGTTTGGTCAGACTCCCAGACAGCTTTTCACCAAACCTCATCCTCAACGCATCACACCCCGATTCCACAACGTCTCGGCAGGGACGAGCCTCAGCACATCGCCCAATGACCTCTCGCCAGGTTTCAGTTCTCCCAGTATGGAATCGTTTGAggatctgacagaggaaagcaaGACACTTGCCTGGAGCAACATGAACAAACTCACACTACAGTCCAGTCACAAGATACACAAAGAGCCAGTGACAGGAATTGCGGTGACTCTAAGTGGTTTGTCCGTTTTCACAACATCTCAAGacTCTACCTTAAAGATGTTTTCTAAAGAAAGCAACGCACTACAGAGGAGTGTGTCCTTTTCCAACATGGCATTGTCCTCTTGTGTGATACTGCCTGAGGATAAAACTGTGGTTTGTTCTTCATGGGATAATAATGTGTACTTTTATTCAATAGCATACGGCAGAAGGCAGGACACACTCATGGGTCATGATGATGCTGTGAGTCAGGTTTGCTGGAGAGAAGACCAGCTTTACACGGCATCATGGGACTCCACTGTGAAGGTGTGGAAGTGTGTAGCTGCAGATATTTCCAATAATAAGAGGTCGCAGTTTTTGCTGCTAGCTGAGTTGGAGCATGAGGCTGGGGTTAACACTATAGCTCTAAGTCCTGCTGGCACGCTCTTGACATCGGGCACAAAAGAGGGCACCCTCAGTGTTTGGGATCTTACCAGCTTCTCCCTCCTGCATCAGCTCACCTGTCATTCTGGAAAGATCCACCAAGTGGCCTTTAGTCCtgacagTCGAAACATCCTGAGTGTGGGTGAGGATTTGTATTTAAAGGTTACAGACGTACAGACAGGCACACTACTCTCTACAGTTTTAGCAGAGGAAGAACAGAGATGTTTTTGTTGGGACGGCAGCATTGTGTTGTCTGGAGGTCAGTCAGGGAACCTGCTCATCTGGGATCTTCTTACTAGCAAGATCACACACAGGATCCCTGCTCActctgGTCCCGTCTCTTGCATTTGGATGAATGAGCAGTGCAGCACTGTCATTACAGGAGGGGAAGATAAACAGATCATGTTCTGGAAACCCCAGTATTAGGACACACACAAGCGCACGCGCACAAACGTTCCCATAACTAAATGTGCTGGACACAAGTATTCAGTTTGAAGCCTGAGGTACATTTTCACACACCTGCTCTATAGACCTGTGAGCATAAATATGATCCCAAGCAGATACTACAATTCTTACCTGAATGCCGTTACACAAACTGAATCAGGAATCAAGTTCATTTTACTGATGCTCTTATTGCAGTGAAAGTTTGTTTGATATTTAAAGTTCACCATGCTGACCATGCctttttagtgttttatattATCGTTTTatcactttcatttttattaggaAGGAATATGATGCCATGTTCATAAATGTGGAATGGGGGATGTATATCTTAGATCCGTATACCTCATTTACATggagaaatataaatattaattgtcCATAAACTGTTTAATGGAGAACGTTCATTTGCCTGTCACAATATAAAGTCGATCTGTCCCCAAAATTCCAGTCTGACAATTTGTCTTGATGGCTCAGAAGGATTCTGAATGTCAacaactgcatgttttttctttgtttattttagtttaaataaaattatcatTTGACTTAGGTTATATTTATGctcacaataaatacacattgcAAAGGCTGTGTACAATATTTATCTTGAAGCAGCTGgcttttgttttaatatgtgaTGAACATGGACAGAATTTAAATCTGAAGAAAATCTAGACAAAATTAACTGAAATTTGTGCATATATAATTAATCTGTTAAAAAATAGTGTCatctaaaaggaaaaaaattcaaaacacttTTTACACATCTATCTACATGTAGAACGTGTGTCACGGCATGTACTTCCAAATAGCTGTAAGCGTACCAGCATCGACCAGTGTTCATGTTGTGCACtttagtgtttgtgttactgcTGTGATTAGTATAAAACATTGCTGTAGTGAGAGTCATAAAAACTGGCCTTGGAGCTGCAGCAGATTAAATCAGGTTTAAATTTATTCCAatctgtaattataattatgtcCATTCATGTACGACATTATGACCTTTATTTTATGTTCCTCTTAATGCAATTTACTAGATAAGATGAAGTACATTGCCCATACTGCAGTAAAAGATGGGGTTTGTTTTGCACTTCACATATTTTTGGGTTTCCATATTGAATAAAATTTTATGCAATTTTTTGACCTGTACACCCAGATGCAAGCAGAAAACTATGCCTCTATATActcatatttattatgtataaatCTATTGATATCAAGCCATTAAGAGTAATACACCTTGTTCAGCAATAGTTACGCAACCATGAAAACGccttttgtgtgtatatatgtacacatataaatatacatgcacatgctgatcttcattttatatttatatcttagTAAGATCTTAGCTAAGAGATTTTTGATAGctagaaaagtaaataaaaaagcaacacCTTACAGGCAAtgcttgtaaaaataaaaatgatcattctTGTGCAATAATTAAAAGAAGCAAGACCTTAATACGAAATGTTCAATTGTATGAActgtacaaatataaatatgcagTTTAATCCCCCATTTAATgcttaatgttttattacattgtttGTCTATTAACGACTAAcctttatttgttgttttttgtttttcatttttataatggtcatttgtttttgtttttgtttttttatttgatagtTAGTTTATTAGTTAATTAGCGGTTCCTAAGCTGAGCTTTTTGGGTGGTGTAGATCATTTTTAGGAAACCTGtttgctttttgtgttttgcactaaataaatgttgtgtCCCTCAAA

Function

GO:

id name namespace
GO:0030593 neutrophil chemotaxis biological_process
GO:0002232 leukocyte chemotaxis involved in inflammatory response biological_process
GO:0002233 leukocyte chemotaxis involved in immune response biological_process

KEGG:

id description
K18953 NSMAF, FAN; factor associated with neutral sphingomyelinase activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80832 lncRNA downstream 352610 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA downstream 364786 20803417 ~ 20804104 (-) True G68186
TU80746 lncRNA downstream 532691 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 533097 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 537180 20630166 ~ 20631710 (-) True G68106
TU81181 lncRNA upstream 115986 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 132040 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 137298 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA upstream 137298 21326076 ~ 21329250 (-) False G68462
TU81263 lncRNA upstream 218333 21407111 ~ 21408207 (-) True G68495
XM_034303373.1 mRNA downstream 8116 21014991 ~ 21160774 (-) False ank2b
XM_034303375.1 mRNA downstream 57613 21014991 ~ 21111277 (-) False ank2b
XM_034303385.1 mRNA downstream 62541 21017886 ~ 21106349 (-) False ank2b
XM_034303382.1 mRNA downstream 62546 21015077 ~ 21106344 (-) False ank2b
XM_034303394.1 mRNA downstream 62547 21012252 ~ 21106343 (-) False ank2b
XM_034303722.1 mRNA upstream 7170 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303721.1 mRNA upstream 7170 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303719.1 mRNA upstream 7170 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303718.1 mRNA upstream 7170 21195948 ~ 21225984 (-) True unm_hu7910
XM_034303720.1 mRNA upstream 7170 21195948 ~ 21225983 (-) False unm_hu7910
XR_003404107.1 other downstream 1025001 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1203052 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 1225523 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 137268 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 179472 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 179472 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 179472 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 229390 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile