RNA id: XM_034303783.1


Basic Information

Item Value
RNA id XM_034303783.1
length 5719
RNA type mRNA
GC content 0.50
exon number 21
gene id ctnnd2b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22545958 ~ 22627023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCCAGTTCCAGACCAGTCTTGTGACAGTGAGAACTCCACCATGCTGAGCCCTGTACTAAACGCCTCCAACGGGGATGGATCTGAGACAGAGACGACCTCCGCCATTCTGGCCTCCGTCAAGGAGCAGGAGCTGCAGTTTGAGAGACTGACCAGAGAGCTGGAAGCCGAGCGGCAGATAGTGGCCACCCAGTTGGAACGGTGCAAACTGGGATCTGAGACTGGGAGCGTGAGCAGCATCAGtTCTGCTGATGAGAAGTTTCGCTGGAACAACCAAGACGGACAAAAGGACATAGAAGAAGAGCTCACCACTGGCCTGGAGCTGGTGGACTCCTGCATCAGATCCCTGCAAGAATCTGGCATTCTGGATTCCCAGGAGTTTGCAGCAGGTGAAAGAGCCGGCATCCTGTCCCAGAGTGCTTTACAGCTCAATAACCAGGAGGGCACCTTCCCCTATACTGCTGGTTACCATAGCAGCCAGACCCTGGCCCTGGGAGACCCAGCGACCTCCCAACCCCTAGCACGCGGTGCTCAGGTGGGAGGAGCCGTGCACAGCTACAATCAGGTGACATCTAGCCGTGCAGCCCAGCTGGTGGGCAGTGACCCCGGCGCACATGCCCAGTCCCGAGACTCACTGGCACAGAGCCATGGCAGTGCTTTCCACTTGCCTGACACTCAGCCTTCAGTCTATTACTCATGTGCCACCCTGCCAGCCCAGCGTGTGAGCTCTCCGCTCTCCATGCAGGCCCTGGGCTCACCCTCCAAACTCCAGAGGCTTGGCTCAGCCTCGGATATGCCCAGCTACGCCACTCTGCAGCGGGTATCCTCACCCAAGCAGTCACCCAGTCGCCTAGCCAAATCCTACAGCACCAGCTCGCCCATTAACATGGCGGCTGGAGGGGCAGCGGCCGCCTCACCTGGGCAGGGCAACGCCACGGTCTCCTCCCCCCTCCACCAGCTCAGCTCAGTTGTGGGCAGCTACGCCACACTGTCACCTGCCAAACGTTTGCTGCACTCCTCCGACCAGTACAAGATATCCCATGAGCTCTATGCCAACGCTACCCTGCAGAGGCCTGGCAGTCTTGCAGGCTCCAGGGGCTCTTACAGCAGTCAGCACAGCCACCTGGGCACCGAGCTGCGCCCCCTGCAGTCTCCTGAGCACCACATTGATCCCATCTACGAGGACAGGGTCTATCAGAAAGCACCACTGAGGAACTTCACCCAGGGTCAGGCTCCATCCTCCCCTGGCGTCGAGCCCATCCCCCTGCAGCGCACAGGCAGCCAGAACGCCACAGGCACCTTTCCCCGCTCCAATTATGCCGCCGCACCTGACTACGCCAACCCATATCGCACGCTGCAGTTCTGCCCCTCAACCGACTCACCCTACAGCAAATCAGGCCCTGCACTGCCGCCCGAGGCCACGTTGGTCAGGTCACCCTCTGTGGACAGCATCCAAAAGGACCCCAGAGAGTTTGGCTGGAGGGATCCTGAGCTGCCTGAAGTGATCCAAATGCTACAACACCAGTTCCCATCTGTGCAGTCTAATGCTGCAGCCTACCTGCAGCATCTGTGCTTCGGAGACAATAAGATcaaatcagagATACGAAGACAGGGGGGCATCCAGCTACTGGTAGACCTGTTGGATCACCGGATGAGCGATGTGCACCGTAGCGCTTGTGGTGCTCTGAGGAACTTGGTCTATGGCAAAGCCAATGATGATAACAAGATCGCACTGAAGAACTGCGGGGGCATCCCAGCCCTGGTGCGCCTTCTTCGCAAAACCACAGATGTGGAGATCAGAGAACTGCTCACAGGCGTGCTGTGGAACTTGTCCTCGTGTGATGCGTTGAAGATGCCTATAATCCAGGATGCACTGGCTGTGCTCACCAACACCGTGATCATCCCTCACTCTGGCTGGGACTCCTCCCCACACCAGGACGAGCGCAAACTGCACCTGCACTCTTCACAAGTGCTCCGCAACGCCACCGGATGCCTCAGGAACGTGAGCTCGGCAGGAGAAGAGGCAAGACGCAGGATGAGAGAGTGCGAGGGGCTGACGGACGCTCTGCTCTACGTCATTCAGACTGCGCTCGGCAGCAGTGAGATTGACAGCAAGaccGTAGAGAACTGCGTGTGTATCTTGAGGAACCTGTCCTATCGGCTAGCAGCAGAGACGTCCCAGGGGCAGCAGCTGGGCTCAGACGAGCTAGATGGGGTGCTGTGCACTGACGCCAGCGGGAAGGATGCCGAGAGCTCTGGCTGCTGgggcaagaagaagaagaaaaagaagagccACGATCAGTGGGATGGCGTCGGTCCTTTTCCAGACTCCGGTGATCCTCCGAAGGGGCTGCAGATGCTCTGGCACCCGTCCATAGTGAAGCCATACCTCACGCTGCTGTCAGAATGCTCCAACCCGGACACGCTTGAGGGGGCTGCAGGGGCTCTACAGAATCTGGCGGCAGGCAGCTGGAAGTGGTCAGTGTATATCCGGGCAGCtgtaagaaaagagaaaggCCTTCCTATCTTGGTGGAGCTGCTGAGAATCGATAACGACCGTGTGGTGTGTGCTGTGGCCACAGCACTCAGGAACATGGCTTTGGATGTGAGGAACAAAGAGCTCATCGGCAAGTACGCCATGAGAGACCTGGTCCACCGCCTGCCAGGAGGCAACAATAACAGCAGTGGCGGCGGCGTGGGAAAGAGCATGTCCGACGACACCATCACAGCCATCTGCTGCGCTCTTCACGAGGTCATTACCAAGAACATGGAAAACGCCAAAGCCTTACGTGATGCTGGAGGCATCGAGAAGCTTATTGGCATTGCACGCAGCAAAGGAGATAAACACTCACCTAAAGTGGTGAAAGCCGCATCTCAAGTTCTAAATAGCATGTGGCAGTACCGGGATCTGCGCAGCCTGTACAAAAAGGATGGTTATTCACAGTACCACTTTGTGGGCTCCTCCTCTacaatagagagagacagacagagacctTATTCTTCCTCTCGcactccatccatctctcccgTGCGGACCTCACCCAATAACCGCTCAGCGAGTGCCCCCACCTCTCCACGAGAGATGATGAGTCTgaaggagaggaagacagaCTATGAGTTGACTGGAACTAATCctggttaccatggcaacaaggGCGAACACACCTCCAGGAAGGACACCATGGCAGCACAAATCTCCAGTGGAACTGCCACACTGTTCCGGGGTGCTTATGTGTCTCCCAGTGACGACCTCAAACATAACCAGGTGTCTGCTCAAGGTAATCCATCAGAGGCCTACCCTCCCTTCCAGACTCCTCCAGGAGCTAATTTCGAGGAGAATTATTATGAAGACCAAGCGCACCAACGCCCCCCGGCCACCGCAGACGGCACCCTCCACCTCGGCCTCAAGTCCACTGGCAACTATGTGGACTTCTACTCAGCCTCTCGGCCCTACAGCGAACTCAACTATGAGACGAGTCACTATCCTGCCTCGCCCGACTCCTGGGTGTAGAGGCAGCGGGCAGGGCTGAGGGTTGGGGTGAATATGCGCAGACAGAAACCAGCCCGCATGTGCATGAACACTAccggacacacactcacacaccaacacacaccttcAGTTTGAATGGATGGCACCTACTGAGCTCTTGATTCACAGTGGTCATTGGAGACCCTctcacagagaaaaagaaactgatGATGTTctggagaaagaaagcaaaaggaACATGTTTTACTAAAAAGAAAATTGAGGTGCAGGGATGGCCAACAAAGCAGAAAAATTGGGGAAGCAGTGAGGGAGAACTATAACTGTGATATAGAGGAGATGGGGACATGAAGCACAAGAACATGTCATACGTCAACACAAGCTGAGGAAATAGATCTGACACATTTTTAGGACATCTGTTTGAGTTTGACCTGCTTTTTATGGAGTGCTTTCTTCACAAGgagatttttatcttttttgttCATTATCTTTATTTTGTATCTCCTCTTTTTAACTCTTCTTAATTCTAGTGTAAAGTATTTGTTGTATATTGCAGATGTAGATACAAGTTACATTGTgtatattacagaaaaaaagaaactgatgtGTCCTCCCCTGTGGCtcataatatcatttttttttggtatatcTGGAAAACAGGAGAAAGGATACTCATACATTCTTTTCTGTAGGTAAGGTCATTTTTGGCACCACAAAAAGTAGGCTTTGATTTAAAAGTGTTGTTTACTCAAACACTACAGTGATATCATAGAGCATCATCATTCCATGCACGGGGTGCTACACTGCCTGGCAAGAGTTTACTGATTAACATTTTTTGGCTTTATTTTGCTCAGATGTTTTTGTTCTATAAAGGTTTAGTGACAGGTTGCAATGAAACTCTGTCGTTCCACTATGCTTCCAGTGATCTGTGCtctgtttttgtaaaatgtgcCAAATGTGGTTATCCCTAAACCAGCGGATCACCACTGTGCTGACATTGTTTACGTTCAACACTATCATCACTGATTCTGACCATATTAGTttgtaaatgcttttttttttttacatttcaatgGCATATAGCCACACACTGCGACTTGGATAACGATTGGAGGGACAAAGTCTTTCAGCGCTACTGTCCCTTCTAAGATGTATAATTCATTTATGCTGTGTTGTAAAATAGATGACTGAGCAAAGCAGcttttttatttccagaaaCCAGTGGTTTTTAAGTTCATCGTAGACTAATCTGTCAATAgattatgaatatatattatataaatacaaatatatatatataaatatatactttttatgtGCCGATGTGGATGTCACCTAATGCAGCAACtttgcaaaggaaaaaaaatacatgtaggATTTTGTTCACGTTACTTCTGGTCTTAAATTTCCTCCAAGCTGTTGCCCTCCTGTTGTCATGTTGTTGCTATGTGAAGCAGGTGAGACCAGGGCTCCAGACACCCAGAGCAATGATTCGGCCAGGTTTCTAACACAGAAACggtgctaaaacacacacacacccacacacacacacatccttgtTTGCATCCTGGATAATGTGTTTGCTGTTTGATGTCACTATCTTTCAAAATATTAAAGCTGTTTTGAACGTGTTTCATCCCTAGAGTGAAATTGAGGCCCCTCTCACGATGGCGTCTTCTTGTTTctaaaaaatcagaaatgcaacactgcaaaaattagCTGCTTGTCTAGACATGCTCCTAGAAAGAATTATTTTCAGTCACAGTTGCCCCCTCTCCTTTTATCTCAGGATATCTTATATTGGTTCTGTAGTGGCTCGGGGAAAGATCCTTCCCTCAGAGAGCAGGCCAGACTGAAAGACACTGAGAGCAGCAGTCATGGCCTCTGATCAAGCTCTTATTTAACCTGAAGTAGTTGAGGACGAGTTCTGAAGTGTGGCGGTAAGCCCTGGTCTTCCCTCCATATCATTTTGAGCTTAGAGATAACTGTCAGAGGCAAGGACCCAAGTGATAATCTCCTGAATTTGTCTCACATATCTTTCAGCACTATCAATAGTAAACGtcggggaaaaaaacatgcacaaaatattTGTGGAAAAAGTAGACATGTCTGAAGACTTGTATTGGAAATGTAAGTACATTTTTCTGTTGCTAGACAAAGTGTTTGAGAGAATTGTGAACCTTTTTATTGCCAGATTGCAACTGCTATAAGATATAAACTGACTATCAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82009 lncRNA downstream 26692 22515704 ~ 22519266 (-) True G69136
TU82012 lncRNA downstream 33648 22505790 ~ 22512310 (-) True G69139
TU82004 lncRNA downstream 86470 22453222 ~ 22459488 (-) True G69131
TU82001 lncRNA downstream 93261 22409603 ~ 22452697 (-) True G69128
TU81994 lncRNA downstream 166425 22379295 ~ 22379533 (-) True G69124
TU82054 lncRNA upstream 17914 22629615 ~ 22631562 (-) True LOC113540019
TU82062 lncRNA upstream 38238 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA upstream 38238 22649939 ~ 22650544 (-) False G69183
TU82087 lncRNA upstream 65675 22677376 ~ 22677918 (-) True G69203
TU82121 lncRNA upstream 159685 22771386 ~ 22772012 (-) True G69233
XM_026936189.2 mRNA downstream 63814 22470219 ~ 22482144 (-) False puf60b
XM_026936190.2 mRNA downstream 63814 22470221 ~ 22482144 (-) False puf60b
XM_026936188.2 mRNA downstream 63814 22470221 ~ 22482144 (-) False puf60b
XM_034303631.1 mRNA downstream 66852 22470221 ~ 22479106 (-) False puf60b
XM_034303630.1 mRNA downstream 66852 22470221 ~ 22479106 (-) True puf60b
XM_034303443.1 mRNA upstream 19544 22631245 ~ 22636088 (-) False LOC113540019
XM_026936185.2 mRNA upstream 19544 22631245 ~ 22635943 (-) False LOC113540019
XM_026936186.2 mRNA upstream 19544 22631245 ~ 22635943 (-) False LOC113540019
XM_034303845.1 mRNA upstream 41912 22653613 ~ 22662482 (-) True LOC113540005
XM_034303297.1 mRNA upstream 67488 22679189 ~ 22701151 (-) False rgs20
TU81579 other downstream 610789 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1127719 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 1174948 21368250 ~ 21371010 (-) False LOC113539989
TU82055 other upstream 20484 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 682250 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 868264 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 868351 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 881678 23493379 ~ 23493919 (-) True G69592

Expression Profile