RNA id: XM_026936917.2


Basic Information

Item Value
RNA id XM_026936917.2
length 2691
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113540421
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21235253 ~ 21248637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACAAGCGCCCCCTAGAGTTAGCAGGACTGATCCCGAAGTGAGGAAACGCAGAAAGACAGGACAGAAGGAACAGCAGCGCTCAGAGGAGACACCGTGGGAGTGAAACACACAGTTGAGGAATGGCTACATGGATTCTCGGTGCCTGTTtctttgtgggtgtgtgtttcctgttatcTAGAGTTTGCTGGTCGAGGACGAGGCGAGCAAAAGAACCTCCACTGGTGAAAGGATGGCCTTTTTTTGGTGTAATTCTGGACTATGGTAAAAACCCATTGGGCTTCCTGCAAGCAGCTCAACAAAAGTATGGAGACATCTTTACATGCCAACTTGCGGGGAAGTACTTCACCTTCATCACGGATCCTTTCTCCTTCTCCGTGGTGATGCGCCAGGGCAAAAACCTCGACTTTCACAAATTCGCTATGGGTTTCTCTCAGCGGGTGTTTGGTCATGCTGATTTTACATCACCGCTGTTCAGCGAAAGCTACCGAGAAGTGCACTCACTCTTCAGACAAACACTACAAGGTCCACCTCTTCAGCAACTCAGCCAGAACATGCTTAGGAATCTGCAGACTGCTTTCCAACACTGCCTGCCAAGTGAGAATGGCTGGAAAGAGGAGGGTTTACAGTGTTTCACCACGCGCATCATGTTTGATGCTGGATTCGTCACTCTTTTTGGTAAGAAGGCAGGGCTCCTTCAGCCAGAAGAAACAGGAGCTGTTGGGACATGCATGCAGAAGGTGAAGCGGGATTTCTTGGCATTTGATGGGGCTTTTCCTGCACTGGCGGCTGGCGTGCCTATTGCGCTGTGCAGACGCGCATGGAGAGCGAGAGAAGCATTAGCTAAGGGACTGCTGCACGGGGAGCTTTATCACAGGATGTGCATCTCGGATCTGATTCAGCGCAGGATGGACGCCTTCGATCGCATGCACCTGGATGAGACAGGAAAAGCACGCACACACGTCTGCATGCTCTGGGCTTCACAGGCCAACACACTGCCCGCTGCCTTTTGGAGTCTCTACTATACACTGAGAACTCCAGAAGCTTTTGTTGTGGCTTGTAAAGAGGTCGACCTAATCATGGCACAGATACCAAATGACAAACCAATCAGCCTGTCCAAAGAGCAGCTGGAATCCATGACTGTGCTTGAGAGTATTATCAAGGAAGCTCTACGCCTGTCAAGTGCTTCCATTATGATCCGAGTTGCAAGTGATGACTTCATTCTGACACTGGACTCGGGTCAAGAGGCAGCTATTCGAAAAGGAGATTACATTGCTCTCTACCCCCGACTCATACACCTAGACCCTGACATCTACCCGAACCCATTGGAGTTCAAGTACGACCGATTTTTGGATGAAGAGGGTCAAAGACAGAGCCAGTTCTTCAAAAATGGCCGACAGCTGAAACACTACCTTGTGCCATTTGGTTCTGGTGCCAGTGAGTGTCCGGGTCGTTTCTTCGCCATGAATGAGATAAAGCAATTTCTCATGCTGGCGCTCTGGCACTATGACTTACAACTCAGTGAGCCTGATGTCACGCTGTCACCAGATCGTACCCGTGCCGGCCTTGGCATCCTGCCTCCTTCACGAGATGTACTGCTTAGATACAAAGCAAGAGCAGACAGGTACACAGAGAGATCCTGGGAGAAAAATGCTAATGATTAATATGTCagttgaaaaacaaaacataccaTGTGTTAAACCAAAACCTAAAAGAGCATTCATTCAGATTTCTTAGTATACTTCTTGATGCAATGTGGCCTCTTTATTAGGTACATCTACTCTAAGGCTATGCATAGCAAGCTTTTACTATTGCTTTAGCGCTGTACTAAAGCATACtgggtttgaaatgaagcaatggcTCTGAGGTTAAAGTGAagaatatcatatttatttggAAGGTATTTTCCTCTATTGCATAAACCACAGAGGAATTGCATTTTATGCATATGGAAAAAGTAACtaaattttaagtaaaattgTCATACTGCAAATCTATTAACTGGACCCTATACTCTATAAACAGAACAGTATGCTCCCTGGTGATGTTCTGCCAGGCCCGTAGCCTTTTTTCAGTCCCTGCTATGCTTAGGGGCTTTTTGACATTCCTTTTATACAAGTTAATCATTCTCTCTTCAACTATagtataaaaatatgtttattaggTACAACTAGAGTAGCTGTACTTAATGAAGTGTCTACTGAGTGTACATTGAATTGTTTCTTTAataatgtgtgaatgtatgGATGTTTGTCAGCTTTCACatgcaaatttattttttctgtatttagaAATGCTTGCCCTTTATTGATTGTGCATATACTCTATAGTATCAATTTGCAGTATTAATGTACaccatgtgtgtttgtaagaCTGAAAAATTACTGATAGTGTGTAAAGGACTGGTTGGATTAAAGAAATTGCATGTCTGCTGGTGGaatgtaaaagttaaaaaacatttactgaaaatCAGAGTGTATACTTAAATGGGAATCAAGGGTGCAGTAGCATTACTTCTACTTTTATTGtcgtctgctttttttttttcttttattgggTCCTTATTATTCCACCATGTGAACTATTGAATTTATGTGAAAGAATGATGTCAAATGATCGTCATGCTGATTAAGTGGATATTTGtatgtcatatttatttcacaaataaataaactcatatatttcaaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80832 lncRNA downstream 418973 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA downstream 431149 20803417 ~ 20804104 (-) True G68186
TU80746 lncRNA downstream 599054 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 599460 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 603543 20630166 ~ 20631710 (-) True G68106
TU81181 lncRNA upstream 56127 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 72181 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 77439 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA upstream 77439 21326076 ~ 21329250 (-) False G68462
TU81263 lncRNA upstream 158474 21407111 ~ 21408207 (-) True G68495
XM_026936000.2 mRNA downstream 1568 21227985 ~ 21233685 (-) True sdcbp
XM_034303722.1 mRNA downstream 9269 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303721.1 mRNA downstream 9269 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303719.1 mRNA downstream 9269 21195948 ~ 21225984 (-) False unm_hu7910
XM_034303718.1 mRNA downstream 9269 21195948 ~ 21225984 (-) True unm_hu7910
XM_026936598.2 mRNA upstream 56055 21304692 ~ 21313897 (-) True chchd7
XM_026936370.2 mRNA upstream 88471 21337108 ~ 21350811 (-) True LOC113540120
XM_034304122.1 mRNA upstream 105982 21354619 ~ 21371010 (-) False LOC113539989
XM_034304123.1 mRNA upstream 115288 21363925 ~ 21371010 (-) False LOC113539989
XM_026936104.2 mRNA upstream 127758 21376395 ~ 21379959 (-) True sox17
XR_003404107.1 other downstream 1091364 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1269415 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 1291886 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 77409 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 119613 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 119613 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 119613 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 169531 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile