RNA id: XM_026936919.2


Basic Information

Item Value
RNA id XM_026936919.2
length 4607
RNA type mRNA
GC content 0.46
exon number 14
gene id sema4f
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13912683 ~ 13967911 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCAGGATTTGTTAGTGACTCGTCACTGGGATCTCGGGACAAATAAACGctgcttgtctttttttctccctctttacGCTTCCAGCCTTGTTTTCCgtcagctgtgctgtgtgtggtgtgacAGCGCGCTGCGGATGTGCTGtgtgctggagctggagctgctgGAGAGGTTTCTATTGGACCAGTAGAATTTGTGTGCACTTGTAAGTGAACGAACGGAAGACCTGACCGGACGCTCAGAGAAAGAGGAGTGTGAGCTTTCTTGTTACGCCAGCCATCGGGTCAGCATTTCTACTGCTGTCAACCTGGACGactttgacttttttctttgttttatttgaggAAATGAAGCGTGTTAATGTCCTTTGAAGGCAGCGCTGAAACAGTGCACTTTACGCGACAGTGGTACGAACACACGGAAACGgagagataaaaacaaaaaccaaaacaaaacaaaacaaaacatcgTGATGTtgcttatttaatttgtttttggaattgtataaatatttattattttcttcctaCATCAAGCTCTTACTTTTTGCAAGTTACCAACTTGCACgaggcttctttttttttttgaaatcctAGGCGAAGTACTGCGTGTTAGTGTGAGAGTAAACGCGGTACAATGAGCTGCAGCTGAGACTGGGCTCCTGTACACTTTTCTCCTCAACTTCAGAGGCTCTGATCCGCGgaacatgaagccagccacctGTCTGCTCTCAGCACTCCTGGCGCTGTGTTTCCCTCTCCACTCCCGGACTGCAGCTCTGTCCAGCCGTGAAGtgGCAAGCTCCATGGTGACCCAGTGGGAATTCGACGACGTGGCTAACATCAGCACTTTCCTATTGGACCGGGAGTCTGGGATACTCTACCTGGGGGCACGAGATGCGATTGTTGCCGTGGATACTGCCAACAAATTAAAGTCTCCCAAGATTGTATGGAATGTTCCAGAAGAGAAGAGCAGATCTTGTGTGACAAAAGGAAAGACAGAGGCCGACTGCAATAACTACATCCGTCTGCTGGAGTTCCTGGGAGATGGACGCATTTATGCCTGTGGCACATATGCTTTCGACCCCCAGTGTGCCTTTGTGAATATCTCAAACTTCACTCTGGAAAAATCAGAGGATGGCAGGGAGGAGATGGAGACTGGAAAAGGGAAGTGCCCCTTTGAACCCAGCCAGCACTATACTGCAGTCATGGCAGgGGGAATCCTGTACACTGCTACTACAAGTAACTTCCTGGGCACTCTCTTTGACATCTCTAGAGCAACGGGCATTGAGCAAGAGCGCATCCGGACTGAACGGTCCATCAACTGGCTCAGCGATCCAGAGTTTGTCGGCTCAGCCTTTATCCAAGAGGATCAAAATAACAACCCAATGGGTGAAGATGACAAGATCTACTTCTTCTTTACTGAGGTGGCCAAAGAATATGACCTCTACACCAAGGTCAAAGTGCCCAGGGTGGCTCGAGTGTGTAAGtctgatATCGGGGGCATGAAGACCTTACAGAGACGCTGGACAACATTCCTTAAGGCTCAGTTGGTGTGTGAGGATCGAGGGAGTGGTCAGCGCTTTAATGTTCTGACTGATGTCTTTACCAAACAGCACCAGCCAGGAGACCCCAGCAGCACACACTTCTACGGTATCTTCACCTCGCAGTGGGAGAGGGAGGAaatgtctgcagtgtgtgtgtacagtctgGAGGACATCACTAAAGTGATGGATGGACCCTTTAAAGAGCTGAAGAAGAGTTGTGAGAACTGGATGAATCCAGAGCCAGTGCCTACTCCCAGACCAGGCCAGTGTCTGAACAGCGCTCTGAAAGCAGAGGGCTTTGATTCGTCACTGAAGCTGCCTGATAAAGTGCTGACCTTCATGCGAGACCACCCTCTCATGGAGAACAGTGTAGTGTCAGCACCCCTACTGGTCAGGAGTGGAGTTACATACACCAAACTGGCTGTAACCCTGACCCCTGTGTCCAATGGCAACAGCAAGCTTAATGCTACTGTTCTGCATCTTGGGACAGATCATGGAGAGCTTCACAGAATAGCAGTAGTGGGACCTAATGCAACTCTTCTGCAAGAACTCCCTCTTTTTCCAGCCTCAGAGCCAATCAACAATATTCTTCTGTACAAGGGTGAGGCTCTGGTCAGTTCTCCTAACTCTCTGGTGAAGCTGCCTGCAGAAGGCTGCACTCTCTACCCTACTTGTGAAGTGTGTGCACGTGCACGTCCACTTGgctgtgtgtggagagagaaggaggctGCCTGTAGCCTGGCTGTCACAGAACCTGGTGAAGTGCTAAATCCTGAAGATTTGGTCAGTCGGTGTGGAAGGAGTGAAGATCGTTGCTCTCCTGAGATGAAAGACCTGCATGTGGCAGAGGGGCTGCATGTGTTGCTACCCTGTGTTCAGGTCTCGCCTCGTCCCTGCCACTGGCAGCACCCACCCCAAAGACATACTCGACGCCACCTCTCTGACTTGGAGGTACGGGTCACTTTGGAAAGCAACGGCacttatgtgtgtttctgtgaggAAGCTGGGCGAGAGCAGCCAGCCTGTCCCAGGGCTGCATACAGACTCCTACTTCAAGAACCGAGTGCGAGTTTGAGCATCATGCAAGCATCTAGCCGTCAGTTCGTGGCAGGGTACATGCTATTTTTCATCATTGGTTTTCTAGTTTGTGGCTTGCTTGTGTGTCTGGTTCACCGGCGTCGCAAGAAAGGAGGCGGTGGTCATTCTTCATCGACCTCAGAAAAGGGGCGGGACCTGTTGCCCTCTTCAGACACACCCCAATCACCCAGCAGTGCCAGTCTGTTTTCTGAGGCAGTTCCCTTTGCAGAGAAAAGGAACGGGACGCTGAATGGGCATGGAGGTCATATGCCTGAGCGGAAGTGTGGTTATATTTATTCTAATTCAAGTGGACTCAAGCTACAGGATACATCAGTCAACCTGGCGGAAGGATTTCCTGGTCGAGAGAGGGCGGGGCcggaaggagaggaggaaggaCTTGGGGACGGACTCAGTGATATAGGGGATGGACTAGCAGGACTGGAGGAAGAACTTGCTAAGCTGCATATGCTGAGAGGAGCGCCATTAGCACAGTGTGAAGAGAGCTCCATCTGAGGACACTTACACAAAGAACTTAGAGCCACAGTATAGAACtgtacacataaacacacgtaCATCCTTGACACAAGTTTGTGTGGTAGCTTGTAGCAAATCTGGGAGAGCAAACATTTAAGGAAGTGCGTGAAGGTAAATGTGTGGGCCTACAAAGACaaacacgcatacacacacccattaaGAAGCTCTGTGTTCTCTGGGAGCTCTTCTCAAGATTGTATGGAGCAGAATGGTGtgttcatgagtgtgtgtgttactggcCAGAGGGATAGAAGCAGGCTTTTGTAACTGTGTGTGACTTTTCTCACCACTGTGTTCAGCCTTCTccaacacagtcacacactccaTGTACTCATTGTggcatgtgtgcatgtttaaCCTCTTTCTGAGCTGTTTTAGGCCAGGACTGAACGATCCAAATCCGTCTCGGACTCTCACAAAGTGAGAAGTCGGACCAAACCATATTTGACTACTAAACACCAAAAGATCCATCAGCTTTAATCAAAGTTTCCTTAAAGATCTCACATTCTCATTGTTCACTAGTACCTCTTTACAGTAGTTCAGCAGAGGTTTCCCGGGGTGGGAAGGACAACAGAACCACATCTGCCCACTGCACGCATGAGGTCAAGCAAGACCACTGTGCTGAAGGCAGGGGTATCATGCAGATGTCATATAGGAGTGACAGGTGAAATCTAACAgcctataaataaagttttttaaagtatatatCTTAATTTATACCTAAAATAAACTCTTAGCAGAGTACTGATGACATGCGGAGAAAAAACTTAGTGCAGTATGTTTTAGGTTCCTTATAGAAGCCTTCTTTTAGGCTGAAACTGTAATCACCAAAGTAAAGCAGGGAAAATATCCAGAAGAAACATTCTTGTCCAAACACAGTGAGGCAAGAGGTTATGATCCTACAAAGAAATTAAAGCTACACTTCTAACTTGACTGGTTTGTTCAATAGTCATAATGATGTCTATAACAAATACTGTACACGTTTGTGAATATCCCATAAATATTTCACTGCTTATTTTGTAGTGACATTTAATCCTTTCCACCATTGTAACGGTTTGAATCGTCTGTTTTAAGTATGTCACTGCCACTTGTCTTCCTGTGatcattctgtttattttgttgttaaTGTGACAGTTTTGTGTAATGGAAATGTAACACTCAGGATTGTATGTACAACCTTCTGATCTTAAACAAGTAGTCTACTGTCAGCGCTTGGTAGCATGATAATCATAGGtacatatttatcatttaaaaaaaaaagaactactATTTCTATACCACACTTTACTATGTCTCAAAATTAATGTTATAGATTGACCTATTATTCCTGAGTGTTATGTTTCCTGTTTTTGCTTATGAATAAAACaatgttaattaatgtacaGATGTTATATtctaaggttttatttttataatttatataataaagataaatgtacatttgttttCAA

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76141 lncRNA downstream 863 13902924 ~ 13911820 (-) False G64252
XR_003404036.2 lncRNA downstream 928 13902898 ~ 13911755 (-) True LOC113540541
TU76139 lncRNA downstream 3378 13902924 ~ 13909305 (-) False G64252
TU76160 lncRNA downstream 22466 13888688 ~ 13890217 (-) True G64267
TU76137 lncRNA downstream 31955 13878030 ~ 13880728 (-) True G64252
TU76189 lncRNA upstream 24660 13992571 ~ 13996399 (-) True G64294
TU76191 lncRNA upstream 30824 13998735 ~ 13999683 (-) True G64296
TU76201 lncRNA upstream 48684 14016595 ~ 14016950 (-) True G64305
TU76186 lncRNA upstream 72755 14040666 ~ 14041288 (-) True G64291
TU76336 lncRNA upstream 210663 14178574 ~ 14230828 (-) True G64434
XM_026936327.2 mRNA downstream 115238 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA downstream 115238 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA downstream 115238 13753798 ~ 13797445 (-) False col4a5
XM_026936261.2 mRNA downstream 217683 13684736 ~ 13695000 (-) True usp12b
XM_026937076.2 mRNA downstream 379419 13527886 ~ 13533264 (-) True cnpy4
XM_026936736.2 mRNA upstream 50547 14018458 ~ 14033040 (-) True dok1b
XM_026936012.2 mRNA upstream 74040 14041951 ~ 14054035 (-) True LOC113539907
XM_026936443.2 mRNA upstream 111794 14079705 ~ 14086981 (-) True cct7
XM_034303617.1 mRNA upstream 189525 14157436 ~ 14220288 (-) False plcb3
XM_034303616.1 mRNA upstream 189525 14157436 ~ 14220286 (-) True plcb3
XR_004578131.1 other downstream 3326 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 4683 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 8662 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 708221 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1635014 12272372 ~ 12277669 (-) False LOC113539775
TU76338 other upstream 264898 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 766745 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1907916 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1911560 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 2005668 15973579 ~ 15991885 (-) False smim20

Expression Profile