Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026936940.2 |
| length | 1169 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | pop7 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 12734646 ~ 12736518 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008033 | tRNA processing | biological_process |
| GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0004526 | ribonuclease P activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| K14527 | RPP20, POP7; ribonuclease P/MRP protein subunit RPP20 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU75293 | lncRNA | downstream | 24805 | 12709629 ~ 12709841 (-) | True | G63555 |
| TU75226 | lncRNA | downstream | 64146 | 12667441 ~ 12670500 (-) | True | G63502 |
| TU75090 | lncRNA | downstream | 245093 | 12484874 ~ 12489553 (-) | False | tmem256 |
| TU74974 | lncRNA | downstream | 378874 | 12354392 ~ 12355772 (-) | True | G63267 |
| TU74923 | lncRNA | downstream | 408975 | 12325460 ~ 12325671 (-) | True | G63219 |
| TU75329 | lncRNA | upstream | 31431 | 12767949 ~ 12772794 (-) | False | G63578 |
| TU75327 | lncRNA | upstream | 32164 | 12768682 ~ 12797341 (-) | True | G63578 |
| TU75331 | lncRNA | upstream | 62648 | 12799166 ~ 12872342 (-) | True | G63580 |
| XR_004578117.1 | lncRNA | upstream | 205152 | 12941670 ~ 12951095 (-) | True | LOC117597210 |
| TU75587 | lncRNA | upstream | 379555 | 13116073 ~ 13116940 (-) | True | G63817 |
| XM_026937075.2 | mRNA | downstream | 21802 | 12710191 ~ 12712844 (-) | True | ufsp1 |
| XM_034303764.1 | mRNA | downstream | 27602 | 12697759 ~ 12707044 (-) | True | LOC113540289 |
| XM_034303765.1 | mRNA | downstream | 42808 | 12680361 ~ 12691838 (-) | True | LOC117597087 |
| XM_026936858.2 | mRNA | downstream | 245084 | 12484723 ~ 12489562 (-) | True | tmem256 |
| XM_026937109.2 | mRNA | downstream | 255682 | 12464516 ~ 12478964 (-) | False | tmem102 |
| XM_026936247.2 | mRNA | upstream | 480382 | 13216900 ~ 13223130 (-) | True | bcl6b |
| XM_034303958.1 | mRNA | upstream | 506151 | 13242669 ~ 13243766 (-) | True | sst5 |
| XM_026936178.2 | mRNA | upstream | 527753 | 13264271 ~ 13267825 (-) | True | tm4sf5 |
| XM_034303429.1 | mRNA | upstream | 549744 | 13286262 ~ 13308475 (-) | True | acap1 |
| XM_034303430.1 | mRNA | upstream | 553458 | 13289976 ~ 13308478 (-) | False | acap1 |
| TU74901 | other | downstream | 456977 | 12272372 ~ 12277669 (-) | False | LOC113539775 |
| TU74900 | other | downstream | 457034 | 12272218 ~ 12277612 (-) | True | LOC113539775 |
| TU74899 | other | downstream | 457034 | 12272372 ~ 12277612 (-) | False | LOC113539775 |
| TU74889 | other | downstream | 485590 | 12247274 ~ 12249056 (-) | False | si:dkey-165a24.9 |
| TU74378 | other | downstream | 1199633 | 11533764 ~ 11535013 (-) | False | LOC117597110 |
| XR_003404098.1 | other | upstream | 467755 | 13204273 ~ 13204462 (-) | True | LOC113540725 |
| XR_003404087.1 | other | upstream | 1167313 | 13903831 ~ 13904021 (-) | True | LOC113540713 |
| XR_003404068.1 | other | upstream | 1171319 | 13907837 ~ 13908000 (-) | True | LOC113540694 |
| XR_004578131.1 | other | upstream | 1172649 | 13909167 ~ 13909357 (-) | True | LOC113540747 |
| TU76338 | other | upstream | 1496291 | 14232809 ~ 14243681 (-) | True | G64436 |
