RNA id: XM_034303349.1


Basic Information

Item Value
RNA id XM_034303349.1
length 1936
RNA type mRNA
GC content 0.44
exon number 13
gene id ccnb3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12069043 ~ 12083211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGTCGGCCGCAGCAGGTCTTGTCCAATCAGAGCGTGTGTGCAAAGTTTAGACGCATGCTGGTAAATGTGCAGTGTTTCAAATCGCTTTGgggaaacaaaacaacaaaaaaattaccgAAAGCAGACTTCTGTTTGGATTTATGTTTAAACTTACTGGGAGTTTTTAAATTCACTGGACGAAGAGCTAGAAAACAAGAAGATGCCGTTTTCAAGAGGAAAGAAGCCGACAGTCAGCAAAATCCCAAAGCTCCACATTAAAAGCTCAGAGAATGTGGAGGATGGCCCTCATGTCAAGCGATCATCCTCTCCTCCTCAAGGGGCTCCTAGGAAGAGAACTGCTTTTATAGACATCACTAATGCTGTGTCTCAGTGTTTTGTGACGCTTCAGTAcagtgctgatgatgatgatgatgtcaggcGAGCTCACAAGGTTGAGTTTAGCAATCCTATCAAAAAGAAAGATCCAACCAAGAAGGTGCAAAAGAAGACCTCTGTGGCCACCAAGAATGAAGCCAACCGAAAAAAGTCGGCCTCGGTCACTTCTGAGAGTCCGTGTGAGGAGCAGGAGAAGGACAAATCCCCAGTAGAGAAACTGGAGGAGCCCCTTCCCAAAGCTCCGCTTCCTGCACACCTTCTGCCTCCACAGATACCCCCAGAGTTTGACATTGATTCAGATGCTTCGAAtgaccacacacagacacctgaATATGCCAAAGACATTTTTGATTACCTGAAGAAAAGAGAGGAGAAATTTGTGCTGCACGACTACATGGACAGTCAGCCGAGCCTGAACCCGAACATGAGGGCAATTTTAGTGGACTGGCTGGTCGAGGTCCAGGAGAATTTTGAATTGAATCATGAGACGCTGTACCTGGCCGTGAAGATGACTGATCATTATCTGGCTGTGGCTCCGGCCAGCAGGGAGTCGCTTCAGCTCATCGGCTCCACAGCCATGCTGCTCGCCTGCAAGTTTGAGGAGCGGCTCCCACCTTGTGTTGATGACTTCCTGTATATATGTGATGATGCGTACAAACGCTCTCAGCTCATCGCCATGGAAACGAGAATCCTACAGGCTCTGAAATTCGAACTCAATATTCCTGTTGCCTATCGATTCTTACGAAGATATGCCAAGtgtgtgaacGCCGGTATGGACACGCTGACGCTGGCCCGGTTTGTGTGTGAGCTCAGTCTGCTGGAGATGCAGTTTGTCCCCGTACGAGCGTCTCTGCTGGCTTCCGCTTGTCTGCTCATCGCCCTAGTAACCAAGGACCTGGGGGGATGGACGCCGTCTCTGCAGTTCCACTCGGGATACAGTGTGGAGGATCTGGCGCCCGTGGCTCGAGAGCTCCAGCACATGCTGGACAGTCCGTCAGACAGCAAGCTCGCGACTGTCCGCAGCAAATACTCTCACAAggTTTTCTTTGAAGTCGCTTTGATGCCTACTGTGAGCTCGGAGAAGCTCGAGAGGTTTCTGAAGTGAGCTGAAGAGATCATCTGTAATCTATAAcctatgtaaatatttgtagtttatattatatatctcctcatgtaataaaataaagtgttctgTAATGCATGTGGTTAATAAGCGAGCATGTTTGTTTGAGAGTTTCCTTAGTGCAGTTTTAGAGAGTTGAAAACAATAGAACCTCGATGTAATAAAACATACGAAGatgttgttaaaagtgttacgctgtattttattaataatatttctaGGTTGTTGATCGGTGTTTTAAAAGAAGTGTTCAAGTGCTGTTCTTAAAATGCGTGTTTTCCGTATTTGAACCATGTTATTAAGCCatgtaaatgtatttctgtaaatattataataatttttttgctcACTATTATAACAACTTTATTATGTGTTGGTTGTAATATTTCAATTTTTAGTCATTGTATTTGATTAAAACGAATAATATATCTTTATA

Function

GO:

id name namespace
GO:0010389 regulation of G2/M transition of mitotic cell cycle biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K21771 CCNB3; G2/mitotic-specific cyclin-B3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74721 lncRNA downstream 64724 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 96096 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 102147 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 170942 11897845 ~ 11898101 (-) True G63031
TU74674 lncRNA downstream 201340 11867450 ~ 11867703 (-) True G63015
TU74905 lncRNA upstream 189161 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 242249 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 271181 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 401663 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 584230 12667441 ~ 12670500 (-) True G63502
XM_034303931.1 mRNA downstream 102140 11862625 ~ 11966903 (-) False htr2cl1
XM_034303930.1 mRNA downstream 102140 11862625 ~ 11966903 (-) False htr2cl1
XM_026937220.2 mRNA downstream 102140 11862625 ~ 11966903 (-) False htr2cl1
XM_026937221.2 mRNA downstream 125029 11862625 ~ 11944014 (-) True htr2cl1
XM_026937219.2 mRNA downstream 125030 11862625 ~ 11944013 (-) False htr2cl1
XM_026936700.2 mRNA upstream 42610 12125821 ~ 12148492 (-) True clcn5b
XM_026936673.2 mRNA upstream 67208 12150419 ~ 12168101 (-) True pygmb
XM_026936372.2 mRNA upstream 87314 12170525 ~ 12182262 (-) True sf1
XM_026937265.2 mRNA upstream 102313 12185524 ~ 12189447 (-) False rbm4.1
XM_026937264.2 mRNA upstream 102313 12185524 ~ 12189279 (-) True rbm4.1
TU74378 other downstream 534030 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 854621 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 856109 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 860210 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 886730 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 164063 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 189007 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 189161 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 189161 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1121062 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile