RNA id: XM_026936963.2


Basic Information

Item Value
RNA id XM_026936963.2
length 4445
RNA type mRNA
GC content 0.47
exon number 9
gene id skila
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26903908 ~ 26913580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAAGTGACGTTTTCATGTCTCGCGCTGTCGAGAGAAACCCAgacagagtgatagagagagagagagagagagagggagaaagagggagacacagaagagagagagagagagagaaagagggagacacagaagagagagagagggagggagagagacacagacacacacacagacagacagacagacagacagagggagagacggAAGTGGAATGCTGTCCCCATGCCAGTCCTGAGGCCGGAGCGTCTTTCATAGTGAGACAAGCCAACAGGAAGACTGCGGAGGTGTGAGACAGGTGTAGGCAGACAGGtcacagtgtgtgagacagcatGGCGAGCATGATGGTGCCGGTTAGAAACGTGAGCACTCTGCAGTGTGGGGTGAAGCGTGTGTGCAGGGACAGACCAGAGGATGCGCCCATAAAGAAGCGCGTGATGGCGGAGATGAAGCTGACGCGCAGAGTGAAGCGGGAGGACTCGGAGTGTGATAAAGCCTTGGACCTGAGTCCGggtctcaaacacacactggctcAGTTCACACTGAGCAGCCGGAGCTCGCTCGGTGGACCGGCCGCTTTCTCCGCGCGCACTGATGTCAGCTCGCCACAGACCATGGCCCCGCCCCTTCCTTCACCCTCCATCCTGGGGGCAGGGCCTCTGTTGGTGCCGAGCGACAGGTCGACGGAGCTGACGCACGCAGTGCTGGAGGGCGAGTCGATCTGCAGCTTTGTTGTGGGAGGAGAGAAGCGTCTGTGTCTGCCGCAGGTTTTGAACTCGGTGCTGCGAGACTTCACGCTGCAGCAGATTAACGTTGTGTGTGACGAGCTGTATGTGTACTGCGCCCGCTGTGACGCCGACCAGCTGCACGTGCTCAAAGTGTTGGGCATCCTGCCCTTCAACGCCCCGTCCTGCGGCCTCATCACACTGACTGACGCGCAGAGGCTGTGCAATGCGCTGCTCCGACCTGGCTCCACCCAAAACCACCCCCAGCCCGGGGTGAAAGGCTCAGCTGTTAACGGACAGTTCGGCTTCCAGGTGGAGCACCAGTGCCTGGGGAAGTGCCGCGGTGTGTTCGTGCCGCAGTTCTACGTGCGTCCGGACGCACCGTGCgtgcagtgtgtggagtgcCAGCTGCTGTTCTCGCCTCAGAACTTCGTCATGCACTCGCACCGCACACCTGACAAGCGCACCTGCCACTGGGGCTTCGACTCCGCCCGCTGGCCGCGCTACCTGCACCTGAGCCGCCGCTACGAGGGCACTGCCGAGGAGACCAAACTCAGCACTGTGCTCGACCAGATGAAGAAGAAATTTCACCTGCAATCAGACACACCCCTGGACCAGgTTGTGGATGAGGACATCTGTGTGAGGAAGTCCAGTCCTTCCACTGATCAGggttcTCTGGCCTTCACTCGTCTGTGCCCTGACATCAAACAGGAAGTCGGACCGCCTGACATCATCCATCCCAGCTACTACCTGTACCCATATGATAAGATGGTGGCACCCAACGTGTCTCTGCAGAAGAATAGTGACAGTGACGGAGCAGACACACTAGGAACCCTGCTGAAACACCACTACAGCAGGAGAACACAcgATGTCCATGCGGCCACTCCGTCCATTGTCGAGGAACCGAAATTTCGCCACGGCGATGAAACGCGTCCACTCCCTTCGGCTGTCTCCATGGAAACAGACGGGAAGGAAGAAGACGATAAGGAGCAGCTGGTGTTTGAGATGGTTCACATGTACAACAGACAGCAGGAGAAGCTGAACGCTACGCTGCACACGCAGAGAGAGCTTGAGACGgagctacaggcagtgtgtgatggtgaggcGGAGCAGTGGAGGCGCTTGTCGGTGGAGCACAGTGAGCTGCAGAGCGAGTTGGAGGCGGTGCACACTGAGCATGCTCAGAAACTGGGAAGGGTTCAGCAGGAGCAGAGGGAGTTGGAGCAGAGACTGGAACAGCTccgacacacatacacacactgcacctgccAGAGCCAGGAGGAGCAGTACACCtcccagctGTGTGATCTGAGAGTGAGACTGGAGCgggcagaggcagagagacaggagctGCAGGATgagctgaggagagagagagatgcccgGGAGAAACTGGAACTGCTCATCAGTCAGCTACAGCAGCAGATCACcagctcagccaatcacagccctCGGAGCATCTACTCAACCAATCACAGCCCTCAGACCACTGACTCAAACAATCACAGCCCTAAAAACCtcacaccagccaatcacagtcCTCGgagccagcacacacactcacctgcaaCCAAACACAGCGGAGCCGAGTCGTCTTGAACACACACTTTATGTTTAAGGACTGTTTTATAAttcaacttattattattattattagtagtattattaatattttgtcattgttgaggcttactctgatgttagggtgtgagtgtgttttccCCTGCTGGacacagcaatcacacacacacacacacacacacacacacatatatgatGCAGCTGTGACTTGTGAGtattaacatttacacacacatataactgATGATGAGGTACAGCTTCACACTGTTCCCATAATTAGCAAACCAGAATTTAATTAACACACTATTAGTAATCAGTTAAAGTAATAACaccttaatttattaattagttgTTGAAACAGTGAACCCTGTTTATTGATGTTTATCAATCCATGATTAGAAATAACCCATGAATCACTAAAGtcttatattaattaattttaattaattaattaaacattaatatgttAATGACTAAACTTTAATATTCAAAAGAATAAGAGCcatgagctcattaatatttattaacacgCTGTAGTTAACACGTAGTTAACATGTAGTTAGTTACGGATGGAATAAATTAGATATTAATGATTGCGGGTGTGTTTAGTAAGCGTTTACACATTCACCTGCTGCATTAACTTCGTTTGACTGACAGTGTGTTAATGCTGATTCTAAGAATTACAGTCCCtgacacgcacgcacacagagACAACAATGACAAGACAAAAGTAATAAGCTGTCACAAATTACACAGTTGTACACTTCTGTACTACTctagagtgtaaaaaaaaaagatgaagtgtgtatTGATGTAGACATGTTACACTAATGTTCCCATTATGCACCACGACAtagaaggggcggggcttgtaACAGATAAAGGACTACTGATGATGGTAGTGATGGAAGATCTTCATACGCGcatctttctccatctctcattagcagtgacacacacacgtagCTGTTAGCAAGCATTGCTGGTggtgttagcatgctaatatCCTCTAATAATGAACACTGTAGCTAAATCTACATAGCATGAGTGAAGGAGGACGTCATGATGGGATCATTTCACATGATTacagcttaataataataataataataatagttatttattactactgttattatttctaataaTCTCACTTCATTTATATCACATCAGTTATGGCCACACCATATTGTCATCACGTGCTTTCACTGacacgtgtgtgtctgtgtgtatgaacACTCCTGtcttaattttattcatatttaaacatttctgccgtttttgtggggttttttttccagattgaACAGATTTTTACTGACGTGGTGTAAATGTCATTTTGTACACGAGGTGGCGCTGTGTGTCAGAGAAACTGAGTGTGATTTCACATTTCTTacgttttattttctcttttgtgcTGAATGATGAACTTGTACAGAGCCTGGTGTAATTAGCCGAGTGCTGCACGCTAACCGGAACAGGCTTAAAGATTTATACAGAAAGTACACCGGGGATAAACGTTAAGCTGTCTCACTGCGTCACGCCGACTGACCGTTGAGCGATTTTAGAAATCACCTCAGAGATGATTTAGAGGTTTGTCCTGCACAGGGGTGGAGCGACACCTCACCCTGATGATACATCATGATGATCTGGAATAGTGATATCGTTACACTTACTATATATCGGTATCGATAATGGCATCGAATGAGTCGGAATAGTGCACTAGTTATGGGCTGTGTTTCAAACCACACTCTGAATAACAGCTGGGACGATATATCAGTGTGACGATATACTTccataatatacattttattttggtgTTAGTTTGGTACCATTCGTATTGTATAACCTGTGATGTAGTGATCGTTGTACCGTATCGCTCCACCCCTCAGCAGTGAGACAGAGTTGGGGGGGTTTGATTTCAGTCctgcatgaaaatgaaaattaaactaAGATGCTGCACTCCTACCTCATGTTGacaaatagaaatatattaaaaaaaaagaaacattttatacaAGATGgggaaatatttacagattacaaacatgtatagtgtgtgtgtgtgtgtgtatacaccttTGATGTAAATACGGCGTGTACAGATGATGAgcttgaattaaattaaacttcTCTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85065 lncRNA downstream 8344 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 44453 26847346 ~ 26859455 (-) True G71734
TU85022 lncRNA downstream 47236 26853267 ~ 26856672 (-) True G71732
TU84994 lncRNA downstream 206811 26696893 ~ 26697097 (-) True G71707
TU84992 lncRNA downstream 207587 26694946 ~ 26696321 (-) True G71705
TU85066 lncRNA upstream 21410 26934990 ~ 26935197 (-) True G71765
TU85140 lncRNA upstream 117737 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA upstream 117737 27031317 ~ 27035852 (-) False G71815
TU85185 lncRNA upstream 229526 27143106 ~ 27151314 (-) False G71854
TU85183 lncRNA upstream 235330 27148910 ~ 27151314 (-) True G71854
XM_026937244.2 mRNA downstream 14572 26881468 ~ 26889336 (-) True nadkb
XM_026937243.2 mRNA downstream 14574 26881468 ~ 26889334 (-) False nadkb
XM_034303326.1 mRNA downstream 58890 26835646 ~ 26845018 (-) False samd7
XM_034303325.1 mRNA downstream 59935 26835646 ~ 26843973 (-) False samd7
XM_034303324.1 mRNA downstream 60626 26835646 ~ 26843282 (-) False samd7
XM_026936874.2 mRNA upstream 3579 26917159 ~ 26933519 (-) True prkci
XM_026937110.2 mRNA upstream 67609 26981189 ~ 26982209 (-) True LOC113540546
XM_034303296.1 mRNA upstream 191914 27105494 ~ 27108411 (-) False tmem125b
XM_026935890.2 mRNA upstream 191914 27105494 ~ 27108411 (-) True tmem125b
XM_026935891.2 mRNA upstream 191914 27105494 ~ 27107789 (-) False tmem125b
TU84853 other downstream 352878 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 352878 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 527820 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2598982 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2867054 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 183022 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 290203 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 481777 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 482571 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 514840 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile