Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034304012.1 |
| length | 3451 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | LOC113540460 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 16939461 ~ 16960809 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060365 | coronal suture morphogenesis | biological_process |
| GO:0021661 | rhombomere 4 morphogenesis | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0030278 | regulation of ossification | biological_process |
| GO:0060536 | cartilage morphogenesis | biological_process |
| GO:0048387 | negative regulation of retinoic acid receptor signaling pathway | biological_process |
| GO:0034653 | retinoic acid catabolic process | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0060323 | head morphogenesis | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU77765 | lncRNA | upstream | 170201 | 16770605 ~ 16770843 (+) | True | G65663 |
| TU77754 | lncRNA | upstream | 177583 | 16758260 ~ 16763461 (+) | False | LOC113539905 |
| TU78081 | lncRNA | downstream | 374688 | 17335497 ~ 17392798 (+) | True | arrb2b |
| TU78094 | lncRNA | downstream | 396529 | 17357338 ~ 17372139 (+) | True | G65938 |
| TU78095 | lncRNA | downstream | 397677 | 17358486 ~ 17359569 (+) | True | G65939 |
| TU78075 | lncRNA | downstream | 441750 | 17402559 ~ 17403879 (+) | True | G65927 |
| TU78076 | lncRNA | downstream | 441750 | 17402559 ~ 17403855 (+) | False | G65927 |
| XM_026936432.2 | mRNA | upstream | 20098 | 16825208 ~ 16920946 (+) | True | exoc6b |
| XM_026936126.2 | mRNA | upstream | 122510 | 16811400 ~ 16818534 (+) | False | zgc:101765 |
| XM_034303409.1 | mRNA | upstream | 122510 | 16815798 ~ 16818534 (+) | False | zgc:101765 |
| XM_026936125.2 | mRNA | upstream | 122510 | 16815851 ~ 16818534 (+) | True | zgc:101765 |
| XM_026937161.2 | mRNA | upstream | 137028 | 16776894 ~ 16804016 (+) | True | ppp2r5b |
| XM_026936043.2 | mRNA | downstream | 224212 | 17185021 ~ 17189452 (+) | True | LOC113539921 |
| XM_026936021.2 | mRNA | downstream | 247694 | 17208503 ~ 17275182 (+) | True | si:ch73-211e3.1 |
| XM_026936036.2 | mRNA | downstream | 318677 | 17279486 ~ 17307870 (+) | True | mtm1 |
| XM_026936037.2 | mRNA | downstream | 318679 | 17279488 ~ 17307870 (+) | False | mtm1 |
| XM_026936038.2 | mRNA | downstream | 318692 | 17279501 ~ 17307870 (+) | False | mtm1 |
| XR_003404112.1 | other | upstream | 179169 | 16761804 ~ 16761875 (+) | True | LOC113540742 |
| XR_003404114.1 | other | upstream | 179397 | 16761572 ~ 16761647 (+) | True | LOC113540744 |
| XR_003404113.1 | other | upstream | 179706 | 16761266 ~ 16761338 (+) | True | LOC113540743 |
| XR_003404115.1 | other | upstream | 179937 | 16760981 ~ 16761107 (+) | True | LOC113540745 |
| XR_003404111.1 | other | upstream | 180225 | 16760749 ~ 16760819 (+) | True | LOC113540741 |
| TU78354 | other | downstream | 648895 | 17609704 ~ 17620079 (+) | True | LOC113539940 |
| trnat-agu | other | downstream | 803652 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| XR_003403977.2 | other | downstream | 1039349 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| XR_004577948.1 | other | downstream | 1152635 | 18113444 ~ 18130505 (+) | False | frem1a |
| TU78855 | other | downstream | 1236503 | 18197312 ~ 18208564 (+) | True | G66492 |
