RNA id: XM_026936974.2


Basic Information

Item Value
RNA id XM_026936974.2
length 4749
RNA type mRNA
GC content 0.43
exon number 32
gene id mrc1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23150126 ~ 23174379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGAACATGATGAGACCGAGACTCCTGAAGCAAGCCTCCATCAACCATAAACATCATTGCTCACGGCATGGATAAATGTAATACTGAATGTTTATCAGAAAAACGGACACCAGTGCCAAAGTGACATTGTGAGACTTGGACCAAAGGCAGGTTTGACACAGGATTTGGCTTGTGTAAGGCTGAAAAAGATGATGAAAAGCAAGAAGATGAAAATAGCTGCTGTTATTGTGCTCCTGGTTAAGATATCGCACTGCTTTGCTTATCCAGatGGAAATTTTTTGATCTACAATGCACATAAGAACAGATGCCTGACGGACAGCCTACAATGGTTAGGAGTGTGTGACCCTCTCAGCGCAAAACAGCAGTTTCGCTGGACTTCTGAGGACCGAATCTTTAATGTTGCCCTGAAGAAATGCCTTGGCATAGGGAGCAGGAAGGAGGGCAATAAACTGCAGTGGTATATCTGTAATGCTAGAAATGACCTCCAAAAGTGGGAATGCAAAAACAATTCACAGTTTAGCCTGAAGAATGAGTCGCTGTACTTGTCCCTTCAGGGAGAATCTTATTCTCTAACACTGTCCAAAAAGCAGGAAGTCAAGAGCCAATGGACAATACATGGAACAACGGACAGCATCTGCTCTCGACCATATCAAGAATTATATACACTTAAAGGAAATGGCTTTGGTCGTCCATGTAATTTTCCATTCAGGTACAAAAATAAATGGTATGCAGGCTGCACAAAGGACGACTCCTCTAAACGCGAGTGGTGTGCAACTGAAAGTATATATGAAGATAATGAGCTCTGGGGTTATTGCCCGACAAGTCAAATAGatGACTTCTGGACCAAGAACCCTCTCACAGGCATTTATTACCAGATAAACAAAGATTCTGCACTTACCTGGTATCAGGCCAGAAAAAGCTGCCAGCAGCAGGGGGGAGACCTGTTGAGCATCACTGAGGCCCACGAGCAAGCTTTCATATCAGGTTTGACTCAGGGGAATGGCCCAGTATTGTGGACAGGTTTAAACAGTTTAGATGCCTCAAGTGGATGGCACTGGATCAATGGGCAACCTTTACGTTATTTAAACTGGCTCAGTGGGCAACCATCTTCTCAACCAGGTCGTAGCTGTGGAGCGATAAATCAGCAACATGATTCCAAATGGTCCACCGATATTTGTTCTGCGAAACGTGGATATATCTGCCAAAAAGTTCTCTACACTCCCACTATTCCACCAGTGGTGCACACAGGTTCTTGCCCCAGACCATGGATACCTTACTCAGGTCACTGCTACTATCTTAATCGCGCCAAAAAAACATGGCTGGAGGCAAAAGATGCCTGTCGGCGTGATGGTGGAGACCTGCTGAGCATTCTCAGTATAGAAGAACAAAGCTTTGCCATCTCACAACTTGGATACTTAAAGACGGATGAGTTGTGGATTGGCTTTAATGACCTCAAGACTGCAATGTTTTTTGAATGGACTGACCACTCCAGTGTCCCATTTGTCTCATGGGCGATGAATGAGCCAAGCCACAATGCTGACAATAAAGAAGACTGCGTTTTAATAAGAGGAGAGGAGGGCAAGTGGGCTGATGAAATCTGTCAAAAAAAGTATGGATTCATCTGTAAGAAAGATGCCAATTCAGTTCCATCCACTAATGATACAGTTGTCACAAGTCCTGGCTGCAAGCCTGGTTGGATCAGATATGGGTACTACTGCTACTTCATAGGAACAGAAACTAAAACCTTTGAAGAGGCCaaacagatgtgtgtgaaaactgAATCTTATTTGGTTGACATCACAAGCAGAGTTGAAAATGCATTCCTGGTCAGCTTGGTAGGGATGCGACCAGAGAATTACTTCTGGATTGGACTCTCTAATAACAAGGATCAGCACACCTTTGAGTGGACTAACAGCAAAAAGGTTTTGTACACTCACTTCAATGCTGGAATGCCAGGAGGGAAACAAGGCTGTGTCGCCACTACCACAGGAATACGTGCTGGATTATGGGATGTACTAAGTTGCActaataaggaaaaatatatcTGTAAAAAGATGGCTGAGGATGTTATCACTACTCTGGCCCCCATAACTACGCCTGCTCCCAACTGCAGCCACGAATGGTATCCACTTACGAACAGAGACTTCTGTTTCAAGCTATTTAGCGTAGATCCCGAACAAAAGAAGACTTGGTTTGAAGCTCTCGCCTTCTGCCGGGAACTTGGGGGCGATCTACTGAGTATCCACAGTGCTTTTGATATCCAGCTGACTCACTCTATCTTcACCCGCGGAGCATGGATTGGTTACAGTATCCAGGATCCCTCTGTTGGTTATGTATGGAGTGATGGATCCACTACATCATATGAAAACTGGCAAGATGATGAACCAAATAATTACAACAATGTGGAAAACTGTGCTGAAATGACTTTATGGTGGTGGAGTAGAACAGGAGCATGGAATGACCTGCACTGTGAAGACAGAAAGGACTGGTTTTGTCAGATTCGAAGAGGAGTTACACCAGATGAAGTGGAAATTACAACTCAAACATATAATAAAACAGATGATGGCTGGGTTATATTCAATGataatcagtattatatcagTGAATATGCTTATGTCTCTATGGAAGAAGCAAGATGGTTCTGTAAGCAAAGACATGGTGATCTTGTTGTCATCAatgatgagaaagaaagaatatttcTGTGGCATCAGgGAAATGCACATAGTGATTTTTATATTGGCATGATAGTTGATCTGGATAAGTCTTTCACatggatggatgggtctCCAGTTGTATTCGAGGCATGGGAAAAAAACCAGCCCTCTCTTCTGAACAATGAAGAGCGTTGTGTAAAGACAACTTATTCTCAAGGGTTCTGGGAGACTATAAATTGTGGTGAACGACTAAATTTTATCTGTAAACGAAGTGGCTCTGTTGAAGTCAATTCCACTGCTGCCCCCACTGAACCCCCCAGAGGAGGCTGTGCTCCTGACTGGGTGAAGTTTCAGGGAAAGTGTTACAAAATAGGACTGGAGGTGAAGACATGGACGGAAGCCAGATCATACTGTAGACATCTTGGAGGAGATCTCACTTCTATTACTAGCAGACTTCAGCATGcctTTTTAACCTTACTGATGGATGGTGATAACCCGGAAGATTTATGGATTGGCTTCAGTAACTTGGCAAACAGAGGATTTAAATGGACGGATGGGAGTGCGGTCACATATACAGGCTGGGCCAAAGGACAACCAGCAGGAGCAGAATATATGCAAGCGTGGGAAAATGAGGAACCAAGTTGTACTGCAATGGGATCCATGCAAACACTTGAGCTGGGCAAGTGGGTAACAAAAGGCTGTAATGATACCAGTGGATTTATTTGCAGCCGTGCTATTGATCACTTTATTGAACCAAGCCCGACAAAGACACCCACGACTTTCATCAAGCTTGGAAATGATTCTTACATGGTCTTGCAAAAAAACTTGACCTGGAATGAAGCAAAGCATGAGTGTGAGTTAGAGGGCGCACATCTGGCTAGTATTCGGGACTTGCGTGCTCAGTCTTACACTGAGCTGCTGTCTGCGAAATTTGGACAGCCCTTGTGGATTGGCCTTAACAGCAAAGAgACAGATGGATACTTTTTGTGGATTGATAACTGGCAGCTGAATATGGAGAGTTGGGGTGACGATGAACCAAAGAGGGACCACCCCTGTGTTTATGTGGATGtggatggaaaatggaaaactgCCTACTGCAATCAAACAACCTACAGCATTTGTAAGAAATCACCAGACGTTGCTCCACCTCAACCAGAGCAGTACCCTGGTGTATGCCCTGACATAATTGAATCTGACCCGAGGATGATATGGCTGCCTTATAGAGGACATTGCTATGCATTTGTGACTGAAAGCGTATCATGGAGCAAAGCCTCTGTGCTCTGTTTGTCAAGAGGTGCCAGTCTTGTCAGCATTGAAGATACAAGTGAGGCCAAGTTTATAGAGAGTTACATCAGTTTTCTTGGGAGTGATCATGGCAAGTTCTCAATAGGCCTTTTTAAGACACATGCAGATCACTGGCTGTGGCTGGACAAAACTGTTGTGGATTACACTAATTGGGAAAAATCTACAGACTATGATGGTTATAAACAAGACTGCGCGTTTATCTCCACCACAACTAAACAATGGGGAAAACAACACTGCTTATATGATTATGCATCATTCATCTGCAAAACAGCCAAGGTTCCAAAGCCAACCACTTCTCCAGGAACTACAGATGAGGTTGTAACACATAGGAACCTTACTGGAGTGGCTGTGGCTGTGGTGCTTGCAGTGCTGTTTGTGCTCGCTGGATTGGCTTACATCTACCACAGAAGGACCACCAGCCAGGTTGCTGCACCTCCATATGCGAACCCAATGTATTACAGTACAGAATCCCCCTTGCCAGAGGACAAAGATACCAAAACATTAGTTGACCACATGGAAATTAACGAATAAGTTTCATgaatattctttttaaattggttcttttttatattaatcattttattctttatataaacATGAATGTTGACTAAAAGCTTCCACATTTGGGCTGTTAAGTAAGTGGTTTTGGAAATTATATCAGTGCTTTGGGGCACAAATGTTTATCAGAAACTGGAAACTGGTGTTACACTTACTAACTAGAATTGCTTTGCTGCTCAAatacttgtttgttttaagttaaataaaagaatatcaAAGATTTAGTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82235 lncRNA downstream 94743 23054514 ~ 23055383 (-) True G69320
TU82146 lncRNA downstream 340877 22808906 ~ 22809249 (-) True G69254
TU82140 lncRNA downstream 344218 22803386 ~ 22805908 (-) True G69248
TU82121 lncRNA downstream 378114 22771386 ~ 22772012 (-) True G69233
TU82087 lncRNA downstream 472208 22677376 ~ 22677918 (-) True G69203
XR_004578004.1 lncRNA upstream 97783 23272162 ~ 23273614 (-) True LOC117597081
TU82439 lncRNA upstream 104196 23278575 ~ 23278782 (-) True G69503
TU82468 lncRNA upstream 156637 23331016 ~ 23331535 (-) False retreg1
TU82494 lncRNA upstream 222285 23396664 ~ 23397963 (-) True G69551
TU82581 lncRNA upstream 278854 23453233 ~ 23454221 (-) True LOC113540115
XM_026937238.2 mRNA downstream 100013 23041108 ~ 23050113 (-) True clul1
XM_026935864.2 mRNA downstream 159510 22986661 ~ 22990616 (-) True adcyap1b
XM_026935865.2 mRNA downstream 159514 22986661 ~ 22990612 (-) False adcyap1b
XM_026936105.2 mRNA downstream 298968 22838027 ~ 22851158 (-) True emilin2a
XM_034303297.1 mRNA downstream 448975 22679189 ~ 22701151 (-) False rgs20
XM_026936334.2 mRNA upstream 55671 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936335.2 mRNA upstream 55671 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936336.2 mRNA upstream 55671 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936333.2 mRNA upstream 55671 23230050 ~ 23263297 (-) True si:ch211-106h4.9
XM_034304031.1 mRNA upstream 110657 23285036 ~ 23291998 (-) False e2f5
TU82055 other downstream 514374 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1214957 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1731887 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1779116 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 119572 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 305586 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 305673 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 319000 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 320656 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile