RNA id: XM_034304072.1


Basic Information

Item Value
RNA id XM_034304072.1
length 3189
RNA type mRNA
GC content 0.45
exon number 20
gene id amph
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23547170 ~ 23583496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcctcctcctcctccgctgTCCTCCACCGTGTAGGTGCTGAAACGCTGCCACCGTTTCAATCCCTGAGCAGCCATGGCAGAAATAAAGACTGGCATTTTCGCCAAAAACGTCCAGAAGAAGCTCAGCCGGGCTCAGGAAAAGGTGCTGCAGAAGTTGGGGAAGGCTGATGAGACAAAAGATGAGCAGTTTGAACAGTGTGTTCAGAACTTCAAGAGACAGGAGTCTGAGGGTGCAAGGCTACAGAGGGAGATGAAGGCTTATATAGCAGCTGTGAAAGGAATGCAGCAGGCCTCCATGAATCTGACAGAATCTCTTCACGAAGTGTACGAGCCTGACTGGCACGGCAAGGATGATGTGATGTCTATTGGAAAGAATTgtgatgcattatgggaagacTTCCATCAAAAACTGGTGGACTCCACAATCTTAGCACTGGACACATATTTGGCCCAGTTCCCTGATATCAAGGTGCGTGTAGCGAAGCGGAGCAGAAAGTTAATTGACTACGACAGTGCAAGGCACCATCTCGAGACCCTGCAGGCTTCCGCCattaagaatgaaagaaaggtCTCAAAGGCAGAAGAAGACTTGAAAAAGGCGCAGAAAGTATTTGATGATCTGAACGTGGATCTGCAGGATGAGCTGCCCAGTCTGTGGGACAGTCGAGTGGGCTTTTATGTGGACACCTTCAAGAGTGTCAGCAGCCTGGAAGCCAAATTTCACAGGGAAATCTCAATTTTCTGTCACAAGCTGTATGAGGTGATGAACAAGCTTGCAGAGCAACACTCAGACAAAATGTTCACCATTCAAGGAGCACCCAGtgactCAGGCCCACTGCGCTTGGCCAGGACCCCAACGCCTCCCGAGGATGAGAGTCCAGAGGGCAGCCCTGCTGTCAGCCCCAACCACACACTGAGACCTACTTCACCTGGCCCTCCTCGACCCAAATCCCCCTCACAGCTCAAAATGGGACCGCCAAAGCCTCCTCCTCCCAAAGTCACTCCAACCAAGGAGCTAGCCCAAGAGCAAATCATCAACCTGTTTGATGGAGGCTTTCCTGAGATCAGTGTCACCTCACCACAGcCAAATGAGAAACCCACAGAATCTCTCCTGGACTTGGACTTTGACCCATTCAAGCCAGACAGCAATACAGCCATCGGTCAAACTCAGTTACCTGCATCTCAGGAACTGTCATGGGATCTTTGGACGaCAAATACTGAGGCCCAGCCTGCATCAGATGCTGGCTTCAATGCCAACTGGACGGCTGACTTTGGTTCTGCAGCTCAAGATTTGGGAGATGTTCAGCCTGCAACAGATGGGCAAGGTTGGCCTCCTGCAGAAGGATGGCCCACAGATACAGTGCCCCAAGGAGAAGTCACAGGCGAGGTGGATGCCTCAATTCCAACTTTTGAGGCTGACTTTGATAAAATGTCTGAGGCCCCAGAAGGGGCAGAAACTGATACAGAAGCAGCCCCAGAAGGAGTGGGAGAGGGGGAAGGGGAGGTGTCCACAGCCCAGGCCCCAGAGGCTGAGGGCAGTGTCACGACTCCTACTGCAGAAACCACTACTGAACCGGCAGAGACCACTGCTGCCAGCAGCCCACCTGCAGAGACTGCTTCTGACAAGATGCCTATTCCATCTGTGGTCATTGAGCCTGCTTCCAGCAATGAGGGCGATGATGACCGAGATGGTGACATCGTGTCTCCAATAGCAGCCAGCGGAGATGGAGTGACACCAGACAGCCAGACAGCCAAAGATATTTCCTCCTCTGGCATGCCTCTAGGCTTCCTGTATAAGGTTGAAACAATGCATGACTTTGAGGCTGCAAACCCAGATGAGCTTGATCTGAAGAGGGGAGACATTGTTCTTGTCGTTCCCACAGAGCTGATGGAAGATCAGGATGCTGGCTGGCTCACTGGCATCAGGGAGCGTGACTGGCTACATCAGGGAGCCTCTGCTCAGAAAGGATTATTTCCAGAGAATTTCATACAGCGACTGGGCTAAAGCCTCAGAGCATGCTGGGACAGGACATACAAAAGCCAAGAGCTACAGACAGCCCTAACACTACAGTGCAGTCTGGAGCCCTGACACACAGCTGTCGATCAGAATGAACAAAGCAAAATGTATCTAAGAGGAAAATACACAATCAACAAAATGAGAGGACACAAAAGCCCTACTCAGAGtgtaaagaaaataacagaGCATGATGCGATAGTATGGTCTACCTTACTCTTGACCCGAGAGCtctctgtttatgtttgtttactTGTAAGCAGCAACGAATTGATGTGTGCTTTTTTGGAATTATGGTGACCTCCACATGTAATCCCTATCTGTTTAAAGGTAAATTATGCtctaaagacaaaaaaatattttctctgcAAGTGTATTGTATTGAGTTTGTTGCTCTGCAGCAAATTTTATCCAAATTTGTAGTGATATGATCTATTTAACCGTTCTAAGTGTTATGCAAGACTTCAATGTTTCCTTTAAGACATTTCCAACCTAAATGTTACCTTGCATCCTTGTTGGTGTTCTCTGTAGTTTTAATGGCTGGACATTTACGGCTCTGGTGATAATATCTGGAGAAACTGATATCGATAATTTGTGATTTTAGTAATATAAGTCTCTACCTGGATGAAGACAGAATTCCAGATAGAACCTTGTAATACTAAGGgcacaatttgttttattaaatacttGCTGTGCTCttgccaaaataataataaaatcctaAATATGTGAACTGATTAAAAGAGAAACATGGATATCTGTAGAGTTACAAACATGAAATGTTTCAAGAAGAACATCTTTTTGGCAAAATGCAGCTTTGCAAAACACAGAACCTAGTGATAAAAGTTTCCTTATATccataattacataaataataacagttatCCTGTGGACGTGTATGGAAAAAAAGTGTTGAATAAAGTTTTATGTTTTgaaaaattctatttatttaactttatattttttaaagtgaagctCATTGGGAGAGTTTTGGGCTGGGATATCTGCAAAATATGCAATATGTGTTGTTTGGTTTAAAAGTTATCCATTGTCTTATTGTCTTGACGAGGTAAAGGTCACTCCTGTGTTTGTTAGCCTTCACTGTAGAGACTTTTTGTGATGTACATATCTGTGTTAATTTATCTTTAAAGTGAATAAAGAATACTCCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82581 lncRNA downstream 92949 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA downstream 92966 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA downstream 92966 23453340 ~ 23454204 (-) False LOC113540115
TU82494 lncRNA downstream 149207 23396664 ~ 23397963 (-) True G69551
TU82468 lncRNA downstream 215635 23331016 ~ 23331535 (-) False retreg1
TU82643 lncRNA upstream 10836 23594331 ~ 23594544 (-) True G69649
TU82692 lncRNA upstream 67556 23651051 ~ 23651866 (-) True G69691
TU82956 lncRNA upstream 338611 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 347838 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 554798 24138293 ~ 24138492 (-) True G70025
XM_026936182.2 mRNA downstream 2438 23537428 ~ 23544732 (-) True LOC113540016
XM_034303623.1 mRNA downstream 41989 23466417 ~ 23505181 (-) False LOC113540113
XM_026936355.2 mRNA downstream 41989 23466417 ~ 23505181 (-) True LOC113540113
XM_034303848.1 mRNA downstream 83445 23446805 ~ 23463725 (-) True LOC113540011
XM_034303847.1 mRNA downstream 104427 23430300 ~ 23442743 (-) True LOC117597115
XM_026936706.2 mRNA upstream 174889 23758384 ~ 23782113 (-) True fam49ba
XM_026936883.2 mRNA upstream 200603 23784098 ~ 23843304 (-) False asap1a
XM_034303743.1 mRNA upstream 200603 23784098 ~ 23843304 (-) True asap1a
XM_026936885.2 mRNA upstream 200603 23784098 ~ 23843302 (-) False asap1a
XM_026936886.2 mRNA upstream 200603 23784098 ~ 23842701 (-) False asap1a
LOC117597117 other downstream 15154 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 29500 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 30811 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 32235 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 33131 23513456 ~ 23514039 (-) True LOC113540012
XR_003404116.1 other upstream 453223 24036718 ~ 24036854 (-) True LOC113540746
TU83344 other upstream 720879 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2790263 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2888585 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2953607 26537102 ~ 26551030 (-) False G71596

Expression Profile