RNA id: XM_026937001.2


Basic Information

Item Value
RNA id XM_026937001.2
length 854
RNA type mRNA
GC content 0.47
exon number 5
gene id mad2l1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20895441 ~ 20899092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTCAAACGCGGTCTGAATTCAAACTGGGCGGCgggtaaaaagaaaacaagggaGCTGCTGCATGACGGCATACGTATACCTGAAGAGAGCTAAAACACGGCAAAATGTCCAAAACCTTGCAAGGAATTACTTTAAAAGGGAGTGCCGAACTCGTCGCTGAGTTCTTCTCATTTGGGATCAACAGCATTTTATACCAGCGAGGAATCTATCCTGCAGAAACCTTCAGCAGAGTCACCAAGTATGACATGAGTCTCCAGCTCACCACAGACCCCAAACTGAAGAACTACCTCACCAACGTGGTGACACAGCTCAAAGAGTGGCTGTTTGACTGTACAGTGCAGAAGCTGGTGGTGGTGATCACATGCCTTGAGACAAATGAAGTCCTGGAGAGATGGCAGTTTGACATCGAGTGTGACAAGACAGCCAAGGAGAGCAGTGCTCCCAGGGAGAAGTCGATGAAAGCCATCCAGGAAGAAATTCGCTCGGTTATCAGACAGATCACAGCTACAGTCACCTTCTTACCTTTACTGGAAACCGCCTGTGCATTCGACCTCCTGATCTACACAGATAAGGATCTGGAGGTCCCTGAGCAGTGGGAGGAGTCTGGGCCTCAGCttattgaccaatcagaagaggTTCGGCTTCGCTCGTTCACCACGACCATCCACAAGGTCAACAGTATGGTGGCCTACAAAAGGACAAACTCCATGTAACCATTTTCTAtgttcgctctctctctctgtttgttttctgtacatagttttcatgtctttttccccccaaacagATCTCTCCTTTGCTGAGGTTTTTATGTCTgtatctctgaaaaaaaaaaaaccgtcCTGGTTTAA

Function

GO:

id name namespace
GO:0007094 mitotic spindle assembly checkpoint biological_process

KEGG:

id description
K02537 MAD2; mitotic spindle assembly checkpoint protein MAD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80832 lncRNA downstream 79161 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA downstream 91337 20803417 ~ 20804104 (-) True G68186
TU80746 lncRNA downstream 259242 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 259648 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 263731 20630166 ~ 20631710 (-) True G68106
TU81181 lncRNA upstream 405672 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 421726 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 426984 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA upstream 426984 21326076 ~ 21329250 (-) False G68462
TU81263 lncRNA upstream 508019 21407111 ~ 21408207 (-) True G68495
XM_026935868.2 mRNA downstream 57343 20835761 ~ 20838098 (-) True LOC113539812
XM_026935805.2 mRNA downstream 69921 20778538 ~ 20825520 (-) True znf16l
XM_026936122.2 mRNA downstream 127015 20755876 ~ 20768426 (-) True sstr1b
XM_026935869.2 mRNA downstream 218297 20661726 ~ 20677144 (-) True peli3
XM_034303290.1 mRNA downstream 220038 20661726 ~ 20675403 (-) False peli3
XM_034303394.1 mRNA upstream 113160 21012252 ~ 21106343 (-) False ank2b
XM_034303392.1 mRNA upstream 113160 21012252 ~ 21106343 (-) False ank2b
XM_034303393.1 mRNA upstream 113160 21012252 ~ 21106343 (-) False ank2b
XM_034303363.1 mRNA upstream 113160 21012252 ~ 21106343 (-) True ank2b
XM_034303387.1 mRNA upstream 113160 21012252 ~ 21106342 (-) False ank2b
XR_003404107.1 other downstream 751552 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 929603 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 952074 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 426954 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 469158 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 469158 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 469158 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 519076 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile