RNA id: XM_026937050.2


Basic Information

Item Value
RNA id XM_026937050.2
length 5626
RNA type mRNA
GC content 0.49
exon number 18
gene id pappa2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25561334 ~ 25631200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAGTTTGAGCTtcacgggaaaaaaaaaatcttgaggGAGAGCTCGGCGGTAGGAGTGGAAGCAGGAGGAATACGCAGGGCAAAGAGTAGCTGACGCACAAACCCAGTGATCCTGAAAAGGGCTGAGAATCACGCGCATGCCATTCGTCACCAGCTGAAGAGAGATAAGTGATGACAACAGACTCTATTTCCTGCGTCCCCATGCGCTGGAAACAggcttatttaataaaatattgagtGGATAGTCAGAGCTTTTACTCTTTTCTGTGCGGTCAAATGAAACCTCAAGCTACTTTTCGTTTCACCTTGGTGTGGTGAACACGCCGGACGGCAGGCGACAGCTTGAGAAGTGGCGATAGGCTACCTCGtataacctaaccctaaccttagaTTTCATATCACCAAACAGCCGGATAGCATCCTTGTTTTTGAGGGTAACAGGCAGCGGTTGTCTTTATTTTAGAGCTCTAACACCATGGAGGAATGGCTTTGAGTCGAGTGATGCTGCGCCTTAACAGGTGACATATTTCGCGCGCGTATGCGCGTGAGGTGTTTTGGCTTTCTTTTAATGGCTGGAGTCAAATGTTGTCAGATTTCTACATAAATCTCTATAAATCTACGAGGTCAGTCTAGAAGATGCGCGCTAGAGGAGAAGAAATCATTGGCTCAGAAATCAAGGTGTAAGCTGTATATAATCGAGGCGTATCGAACTCCACGCAATAATAACTGGTAAAATTGCTTTCTGCTACGTGTGCTAAGTTGAGAAACAAGAAGAAACATTCATTCAGATTCACCTTAATATTTAACCAATAATTTCTcgaaataataaacagaaagacaTTTCCCTCAACACAGGAAAATGATCATGGCTTCAGCCAGTAACGCACAGTAAATTTTTGTTCAGATCTTGGTGACACGTCATTCAGTAATAATTTAGTAGAGTTGACTTATTCAATTGTACTATTATATTATCCatagtttattttgtttgctaCTAGTCGGGTATTtgacaacattaaacacaaaccaGTCCTCAAACTGATCATTCCAGATTGAATGATTTGATTATGCAGGGAAATTAATGTCACAATGCTTATCAGACTACTGACCATCATTCTTGTAATATTCAACACATGGCTGCTAAACACAGCTATGTCAGACCACATTCAGCACTACAAGCAGAGTCTGGTGCTGAAAGAGGCCAGGAAACAGACTGCTGAAGAGCAGTGCGGCTCAGTCAGCCTCAATGTCCCTGCAGCCCAACCCTATCTTCTAGCAGGCATGCCAGGCAAGTATACCCGCCTGCCAGGCCTCTATCTGAAATCAGTGCTGAACACAGGCTTCGGCTTAGGTGAATACAGTTCTGACAGAAGTAATGTCCCTGGAATGTGTGATGAAACTGATGaccaaaacaaacatggtgATAACTCACTACTTATAGCAAATGGAGTGCAGCTCTCTTCTTATCCTGAATCATGGGGCAGTGGCAgccaagaaaaaaatgttgatggTTCGACACATTCAAAACTGAAAGAAGCACTGGACTCCTCAAATGTTGACAACTCTGCTAAGTTTTTCTCACTGAAAATGCCAGATTCAAGCAGTGAAACCTCTAAATCAGCATCAGTCATGGCAGAATTCCAAAGCCCATGGACATGGATGGAAAGGACGACTAGTTCCTCTTCAGCAAGAAGAATGCGTCGCAGCCCTGTAAAGTTCACCATTGAAGGGAACAAGCATTTAGGGGAAGGGAATGAGGACTACTCTGGGGAGGTGGAGGGAAAGAACAGACAGGCCACAGAATTGTTGCGTGCCAAGATCCACAGTGTCCCGCCGAAGTGGATGACCGCGCTGTATTTCAGTCAGAGGGAGCAGCTGAAGGTGAACCCAGCAGCTGAAGTGAAGCTTCCTCGCTCCAGTTTCACACTAGAACTATGGGTCAAGCCTGAGGGAGGTCAGAACAATCCAGTCCTTATAGCAGgcGTGTTTGACAACTGCTCCAGCAACAGTGAAAAAGGGTGGTCTGTTGGCATCCGGACTTCCAAGCCCATGGGGAAAAAAGATAGCTGCTTCTTCTTTACTCTCCGTACAGACCGGGCCCAAAGATCCACCACTCTCGCTGGACATCAGCACTATCAGCCAGGTGCCTGGACTCATATAGTCGCCAGGTATGATGGCCACCGGATGGCTCTATTTATAGATGGTGCCAAAGTTAGAGAGAGCACACAGCAGTCTGGTGATCTGTATGGCCCTTTTATCAAGAGCTGTCGCACATTTTTGCTGGGAGGTAACCTCTCTAACTCTGAACAAGGCTTTCGAGGTTATCTAGGAGGTGTTATCTTGTGGGATCATGCTCGCAGTAGGAACGAGCTTTTTAAAAGTGATGTGTGGCATTCAAAGAAACAGAACCCCCTCCTAGAACTCTGGGCCGACTTTTCCATGATGGAGGCACAATGGGTGCCATACAAAGACCGCCAACACCCAGCCATTGTAGTCTTACCAGCACCAAAGCAGGAGCTAATTTCACCTTTCCTGCCTCCTCCTTGTGGGGTGACTGTTTGCGACAATCCAGATATTATCCTGAGCTACAACCAGAACTGGGAGCTGCGGGCTGCTAAAAGGCTACGATACCGTGTGGTAAATGTGTGCAATGATGATGGTAGCAGTCCCACTGTGTCAGAGCAGCAGATTCTTTCTCAGAAGCAGGCACTGGAAGGAGCTTTTGGACCATACAACCTGACACTGGAGCTCAGCATAATTAACGTGTACAATTCATCACTGCGGCAACGCCTTGTGCTCAGCAACTGCCATGTGACCAAGGTGGGAGATCGTCACTGTGACCGAGAGTGTGATCACCCTCTCACAGGCCATGATGGAGGTGACTGTCTGCGCCCAAGCACCTGCTACAGCTGGATGAGGGGTGATGGGGTGTGTCAACCTGAGTGCAACACCATCCATTATGACTATGATGATGGTGACTGCTGTGATCCAGAGGTCACTAATGTCACAAGAACATGCTTTGACCCTGAGTCACCTGAAAGgGCTTACCTGAGTGTGAAGGAACTGAAGGAGTTGCTTCACCTTAACAGCTCAGACACACTGAATGTGTTCTTTGCCAAATCAGCTCAGGAGGAACTTGCTGGGGCTGCTACATGGCCATGGGCCAAGGAGGCCCTTACACACCAAGGTGGAATGATACTGAACCCATCCTATTTTGGCACTGTTGGTCACAACAATACCATGATCCATGAGATGGGCCACATTTTTGGACTGTACCATGTCTTCAAGGGGGTGAGCGAGCGTGAGTCATGTGAAGACCCATGTCAGGAGACCACAGCGTCCATGGAAACTGGAGATTTCTGTGCTGACACGGCTCCAACCCCAAAGTCAAAAGCATGCCAAGACCCTGGCCTGGTCAATGACACCTGTGGACCTATCCACTACCATAATACACCCTACAACAACTATATGAGTTATACAGATGATAACTGCACCAACCACTTCACACCAAACCAAGTAGCTCGGATGCACTGCTACGTTGACCTGGTGTACAAAAACTGGGTTCAAGACAGAAAGCCCACTCCAATTCCTCTTCCACCTATGGTGATTGGCCAAGATGATGACTCTGTGTCCATTCACTGGTTGCATCCAGTTAGTGGGCCTCTCATGCAAAGagAGGAAGGAGTGAACTGTCAGTTGTGTGATGAACATGGAACACTCCATCAGTATGCCTACAAGGCCACCTCACCCCATTCCTGTGACAGCAGTGGTTACTGGACGCCTGAAGAAGCTGTGGgTGCGCCTGATGTTTATCAGCCATGTGAACCTAGCATGCACTCCTGGAGCCCTGAGTTCAGCCTGTATGAGGCCAATATGAGTTCTCAGTGTCTTCAGACTGGAGGATGTGTTCTGCAGTTGTACTTTCAGCATGCAGTAGTTCCAGACACACTAACTGTGTGGATCACCTATATCTCCTTCAGCAATCACGCAATCTCTGATCTGGAGTTCATACTGGAGACAGGTGAATCAGTTCACACTGGCCCCCAGAATGTTTTTTGTGATATTCCTCTAACTCTGCGTGCCACCAGTAGTAAGAAAGTAAAGGCTGTAAAGATCTCCACGTTTGATAAGAAGCTGGAGGTTGACGCTGTGCTGCTGACTTCACGACCCCATAATCCTCTTTGCTCTGTCTGTCGTCCACTCATCTACCATGTGTTACGAGATCCACCCATACAGGAAGGCAAGGGCTCTGTCACACTCAAACAATCCACATACACAGACAGTGATGTACAGAAAGGGATGCAGTATGAGTACAGGATCCAGGTGGAGGCCGAAGGCTTGCGCAGCGAGCTCTCTCCTTCTCTGGTCTACACCCATGGAGACCCTTTCTGTGGAGATGGACAACTTCAAGGGATAGAAGAGTGTGACGATGGGAATCTCTTGGACAGAGATGGCTGCTCCAAAAAGTGCAGCATGGAGCCAGGCTTCAACTGTGTGGGTCAGCCAAGTCATTGTTACTTTTATGAGGGTGATGGTGTGTGCGAGGAATTTGAGAAGAGCTTCAGTGTTCAGGACTGTGGCTTCTTTACCCCAAATGGCTTCACTGACCAATGGGCTTCAGGTGCAACAGCTTCCCATCAGGACTGGCGGTGCCCTGCGCTGTCAGCAACAGGGGAGCCCAATCTCAGTCTGATGTGCAAGTCTCAGTATGTGGAAATGAACGACGCACTAATGCAGGATGCATGGGTCCCCTGCACAGCCTTGTCTCACTACAGCAGTTACCATGTCCAGGAGCAGCCTGTGTGGCTCAGGGTGGAATTCAAGCAGCCTGGGGTAGCAGCCTCCATTCTCATCTATCTGGCCTATGATGGAGAAATGCAGAACACTGGAGAACAGTGCAAGAAAACCATGTCTATCCAACTCTGTGACACTAGTGACAAAAACCACACACTTGgtaCCTATGAGCTGTCATGCCAGCATAACCCCTTGGTGGTGAATGTGACCCACAACCTGGGCATGCCCTTCTTCCAGACAGCTGCTTTGTTGCTAAACTTCTCCACTGCTCATGTGGCTGTGCTAGGGGTGGCATTACGTACATCCTGCCATTTCAGTCCCTTCGCCCTGACTGGGTGCGTGCGCAGGCCAGGCACTGTGGACTCCTGCAGTGCTGTGAAAGTAGAGCATGCTTCAGTTAGCTGCACCCCTATTCTGGACCCCACACACTGCTCCATTACCTGCCACCGAGGGTACACACTGCACGTGCTCAGTGGCCTGGGCTTTCGTCCTCAACAGGGGAGAGCAATACATTGGCCTGTCTTGAGGATGGACTGTGGTCATTCCCTGAAGCGTATTGTAAGATTGAGTGCCTGGACCCACCCACTGTACCCAATGCCAAGCTCTTGGTGCCACAGTGCAATGGCAGGAGGCATGACGTGGGCACCGTGTGTCGCTACAAATGCAACCCCGGATATTACATTACGGGTACCCTGACCAAAAAGCCAAGGAAgaggtTTCTGAAGCTGGAGTGTTTAGAGGGTGGCAGATGGCAGACAGGTGGCTGTTCCCCTGTCTCATGCCCTGCTCTGCCTGCCATGTTTGAGGGCATGTACACATGTACCAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84165 lncRNA downstream 8892 25571309 ~ 25571525 (-) True G71013
TU84116 lncRNA downstream 26188 25553077 ~ 25554229 (-) True G70970
TU84048 lncRNA downstream 135369 25409714 ~ 25445048 (-) True G70906
TU83664 lncRNA downstream 707584 24872630 ~ 24872833 (-) True G70540
TU83444 lncRNA downstream 1013906 24566201 ~ 24566511 (-) False ccdc24
XR_004578064.1 lncRNA upstream 100193 25731393 ~ 25782894 (-) True LOC117597162
XR_004578114.1 lncRNA upstream 252928 25884128 ~ 25885243 (-) True LOC117597207
TU84465 lncRNA upstream 253459 25884659 ~ 25885257 (-) False LOC117597207
TU84466 lncRNA upstream 253459 25884659 ~ 25885257 (-) False LOC117597207
TU84476 lncRNA upstream 272574 25903774 ~ 25904073 (-) True G71298
XM_034303717.1 mRNA downstream 155241 25423546 ~ 25425176 (-) False LOC117597083
XM_034303716.1 mRNA downstream 155241 25423546 ~ 25425176 (-) True LOC117597083
XM_026937242.2 mRNA downstream 324568 25139815 ~ 25255849 (-) True brinp2
XM_034303670.1 mRNA downstream 559340 25013206 ~ 25021077 (-) False cenpl
XM_026937257.2 mRNA upstream 273240 25904440 ~ 25932761 (-) True tnn
XM_034303577.1 mRNA upstream 339434 25970634 ~ 25973005 (-) True LOC117597050
XM_026935873.2 mRNA upstream 688087 26319287 ~ 26329275 (-) True parp2
XM_034303634.1 mRNA upstream 688087 26319287 ~ 26328755 (-) False parp2
XM_026935872.2 mRNA upstream 688087 26319287 ~ 26328732 (-) False parp2
TU83344 other downstream 1275491 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 1543563 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2048401 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2062747 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 2064058 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 742558 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 840880 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 905902 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 1465402 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 1572583 27203783 ~ 27204186 (-) True G71909

Expression Profile