RNA id: XM_026937054.2


Basic Information

Item Value
RNA id XM_026937054.2
length 6517
RNA type mRNA
GC content 0.46
exon number 10
gene id slc8a4b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14092494 ~ 14151289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacactctctctctctctctctctctctctctctctcacacacacacacagattcagtTCCCATTCTCCTCAGTTTCAGTGTCCGCAGCTCCtgcttctcttctcctctcagcCTGAAGCTCTCCTTCACCAAGGCACAGGTATTTGCATAAGTTCTTCTCGGCTGGAAAGGAGGGACAGGAGCGTTCATTCAGCTGATGAAGGAGACAGGGTGAGGGCGTAATTCGGTTTGAAAGGGCATCGTAAATTATCCTCAGACTCTACGATCGATCCTGCAGCGGAGGAGAAATCCTTTTGCCCTGCTGCTCACACTGTAGTGTTGAGGAAACTACGTGAAGAGACGGATCACCTCCAGAACACAGTCATTCCTAACTGACGGCATGGACCCCAGCAGCGCGCTTTTCCTCTAGAGCAGCAGCTGGCTGTTAGACAGCAGGACCAGGAGCGACAGACAGGTGCATCACACACCGAGGATCTCTCCTGTGGATTTCCGCTTTATCTCTGACCCGATTCAGTCGtgtgtcagCAGGATAAGAGGAAGCTAACCTAGTGAGTGAGAAACCCCAGCCATGACTGCCTAGCACCAGACTTCTGTCCCTGAGCCACCAGAGAGACCCTGACAAAGCCATTACCTGTTTATAGAGGAGCTTTGGTTCTGTCAGACCAACAGTGGcTCGAAACCACAGAGAAGATCTTAAAAACTGCTCTGGAGGACTGACGATCCTGAACCATGCATCTCACCCCCCAAaccctctctttccttttcccttTACTTTTtcttatctctttctctgtcccctCAAATGCTGGTTCCCATGACCTATCCTCCTCCAGTGCCAACTGTTCCCAAGGTGATGTCTGCTCTGAGGGTGTGATCTTACCAGTATGGAACCCCCAGAATCCCTCAGTGGGTGACAAGGTGGCTCGTGCCATTGTCTACTTTGTGGCCTTGGTGTATATGTTCCTAGGGATGTCGATCATTGCAGATCGCTTTATGTCTTCCATTGAGGTAATCACCTCCCAAGAAAAGGAGATCACCATCAAGAGGCCCAATGGTGAGACCTGCACAGCTACAGTGCGCATCTGGAATGAGACCGTATCCAATTTAACCCTTATGGCTCTTGGATCGTCAGCTCCTGAGATCCTGCTTTCAGTCATTGAGGTGTGTGGGCACCATTTTGAGGCCGGAGATCTTGGCCCAAGCACCATCGTGGGCAGCGCTGCCTTCAACATGTTTGTCATCATTGGGCTCTGTGTCTACGTGGTGCCTGATGGTGAGACCAGGAAGGTCAAGCACCTGAGAGTCTTCTTTGTGACGGCGGCATGGAGTGTCTTTGCCTATGTGTGGCTCTATGTCATCCTTTGTGTGTCATCCCCTGGTGAGGTGGAGGTCTGGGAGGCTGTGCTCACCTTCCTCTTTTTCCCCGTGTGCGTGGTGCAGGCGTGGGTCGCTGACCGCCGCCTCTTCTTCTACAAGTACAGTCGCAAGCACTACCGTGCCGACAAGAGCCATGGCATTGTGGTGGAGACAGAAGGAGGGGATGAAGGAGTGAAGGAGACAGCCTTCAACAAAATGGACATGTTGGAGCTGGACGGCATGGCAGCCCACCTGGATGGAATGCTGGGGGGAGAGGATGGACTTGGAGGACGTGATCATGAGGAAGAGGCCAGGAGAGACATGGCCAGGACACTGAAGGAGCTCAAGCAGAGACACCCAGATAAGGATATGGAGCAGCTTATAGAGATGGCCAACTATCAGGTGCTGATGCAGCAGCAGAAGAGCCGAGCATTTTACCGTATTCAGGCCACACGGATGATGACCGGAGCAGGGAACATTCTGAAGAAGCATGCAGCCGATCAGGCCCGGAAGGTAGTGAGCAGTGGAGAGACGCGGGAGCAGGAGGACGACCCCTACACCACATGCCTGGAGTTTGAGCCTCCACTCTATCAGTGCTTTGAAAACTGTGGCCTGCTGAAACTCACAGTGGCAAGGCATGGGGGAGATGCAGCATGCACTGTAAAGGTTGACTATCGTACAGAAGATGGCACTGCCAACGCCGGCTCTGACTATGAATTTGCTGAAGGGACTCTGGTCTTCAAGCCCGGAGAGACCCTTAAAGAACTGACTGTTGGCATAATCGACGACGACATCTTTGAGGAGGACGAGTACTTCTACGTGCACCTGAGCAACCCACGCATTGTAGACGGGACCGATGGCCACCTGGCGGATGGGGGCGCTCCGGCTCTGAAGGCGGCTCTGGGAGAGGCTCACACAGCCACGGTGACCATCTACGATGATGACCATGCTGGAATCTTCACGTTTGAGAGTGAGTCAACACGGGTCAGCGAGAGCGTTGGGATCATGCAGGTGAAGGTCCAGAGGACGTCTGGTGCCCGGGGTCTTGTCGCTGTCCCCTACCGCACCATCGATGGTACAGCCCGTGGCGGAGAAGACTATGAGGAAACTTCTGGAAAACTGGAGTTCAAAAATGACGAGACCATGAAGATTATTGAAGTGAAGATCATTGATGATGAGGaatatgagaaaaacaaaaccttcACTATTGAATTGGGCGAGCCTGTTCTCCTGGAGATTGGACAGAAACATggggACTCCAATGAGAACAAGCCCACAGTAGGAGCAGAGGAAGAAGAGGTAGCTAAGATGGGATGTCCCAGTCTAGGAGACCACACCAGGCTGGAAGTGGTGATTGAGGAGTCCTATGAGTTTAAGagcacAGTGGATAAGCTCATTAAAAAGACCAATCTGGCTCTGGTAGTTGGAAGCAGTAGCTGGAGGGAGCAGTTTGTCAGCGCAGTTACCGTGAGCGCAGgtgatgatgatgaggaagagaGTGGCGAAGAGCGCCTCCCTTCCTGCTTTGACTACATCATGCACTTCCTCACAGTCTTCTGGAAAGTTCTGTTCGCCTTCGTGCCACCCACTGAGTACTGGAACGGCTGGGCGTGTTTCATCGTATCAATCTCTTTGATTGGCATCTTAACAGCAGTGACGGGTGATCTGGCCTCCCACTTCGGCTGCACCATTGGTCTGAAGGACTCCGTTACTGCCGTGGTGTTTGTAGCACTGGGCACCTCAGTACCAGACACCTTTGCCAGTAAGGTAGCTGCTATTCAGGACCAGTATGCTGATGCTTCCATTGGGAACGTGACTGGCAGCAATGCGGTGAACGTGTTCCTGGGCATCGGTGTGGCATGGACCATCGCAGCTGTGTACTGGCGCAGCAAGGGCAAAGCCTTCTACGTGGACCCAGGCTCTCTGGCATTCTCTGTCACACTCTTCACTGCgctatgtgtggtgtgtgtgagcgtgctGCTGTATCGCCGACGCCCCTCTGTGGCCGGAGGAGAACTGGGTGGCCCACGGACTTGCAAACTGGTGACATCGTTGCTTTTCTTTGGTCTTTGGCTTATCTACATTTTACTGGCCTCACTGGAAGCATACTGCCACATTCCTGGATTCtgagacagaaataaagcatGTGAAGAGACTTTAAGTTCACTTCTCACACTAGATAAGCGGCTTCATTAACgttttagtatttaaatgaaCTGTGAGTGTCATGTTCCACAATTTTTCCCCATTAATCCTCTCGGTTCTCTAAAGAAATACCTTACTGTGGATTCTTTTGTCCCTTTGCCTTACTCTAAGAACTCTGAAATTGTCTGTTCTAGTAACCAATAAGCCTTTTTcttcccatttttcctgtttgagCCAATTCCATGCTCCTGTTTCAGATATAAGGtcatgtgtttatgtttttctACTCTTTTTGAATTGCGTCAAGTGTCAGTATTGTTATTGTATAATTGCAGTTATggtattttaaaaagacatttggaCCAAGACAGACTGTCAGCGACTAACTGGATAAAATGATGGCCTTGCTCATACATGTTCACGTGTTAAAGCATGCTTCAAAATGGAAGAAGCTCGTAAGAAAATAGCAGAGAACATGGACAGACAATAAGCAAATTCTTTGAAGGAAGATGGACACTGAAAAAAATCCTCAGTCTGGACTCACAAAAGcaacataaaagaaaatgagacagGTTTGAAAATGATTTGGATGGTGCTGAAGATCGCATACTATTTAAACCTGCATGAGCTGGATTTGTGGACCCCGCTGATACCCAGTCATACACTAAAGAGGATTTCCAGCGAAGAGTTCCCACTGACACGATAAGCTAATTTAGTCCAAGGAcgcattctttttttctgaatggtTAATCGTACCTGAAGCTCAAGCATGCCATGAAGAAGAAAGAGCTGAGCTATGCTGTGATGATCTATATGGACAGTAGGAGGTGGCATTTCAACATGGCCACCACCCTCAACACGCCAAGGGGAGAAGTGTTACTATGGAAATACTgaacagaaagaggaaatgaCCTTTGCCATGTGTGTTCAGTGCATGTACACACGCTCTGTCCCTGCTTGTCTGTCTACAGGAACTCACTGACTTTATGTGTTCCAAAatacaactattattattattattattattattattattattattattattattattattttatattgattaCTTCGTTGTTGATGTCCAAGTCCAATGGTACTGTACGTTATCAGTCGTCACTGTTTTTCTGTGGTCACAGTCAGTATTTGTTACAGCTGGCTTTACTCTGTGCTGTGAAGATAAAGTATCTGTGACTATTTGTATAGTGATTGAAtaggagagggagaaagaaacaGGGAAAGTTATGActacttcctcctcctcctcctcctcctcctcctcctcctccttcttctcctcctcctatCTCAGtcctctgtatttctgttctCAGAATAGTCATCCACCACAGAGAGGAAACggagacagagaagaaaaaaagaaatgagtgtGACAGATTTAGTACGTGTGCAGATCTTTAGCTATTCTAAGTAGCTACTGATGCCTGATCCATTGTTTTGAGTGATAGAATGCGTGCGTGGGGTATTTTTAGCTATtcctgttgctaggcaaccatCGCGGAGTCATTGTCtcatgtgtgtgcttgtgtgtgtgtgtgtgtgtgttaagcgcCTTATAAGGTAGCTACTTTTCTTTCTGGCTGTCTGGTTGCTCTTAATAAATTGGAGTGCCAACCCAAAGCATCCCGATGAGGAAATAAGTGTTATAATTGCATTCCATACCCAGATAGccagagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaggtttaatCCTGAGTTGCTTGTGATTTAATATTTAGAGAACCGAGTGATTAgtcatgttttacacacacaattataaagtgtacatgtttgtgtgtgtgtttgtgtgtaagtgtgtgtgtgttgttggctTCTCTCTTCCTGGCTTCTTCAATTTCACTTAGTTTCTGAGTGTCACAGAATTTGTATCTTGACAGGCATGAAgaagaggacacacacacacacatacacacacacacaggtatctGTAAGAGGCATTAACCTCTCACAGTGCAGACATCATTTTGACATACCTTTGACACCCAGACACGTGGTTCTCAGCActcctctctcactgtctctgccTTTGTGCAtggatacacacaaacacacacacacacacacacacagatttccaTTCATTCAGAAGTGATTATGCTGCCATAAGGTTTGCACAGTAAGTGGTACAGATTGAATAATAGACAGTAAAATAGGTTAGACCACTTGGACAATCCTCATTAACACGAGAGAAGTACATTTGTAACttcctttgtgtgtttgtttatgtacTTTGATTCTACCAATATTTGTTTTTAGCAGTAattaattagatttatttatgtatgagTGGGTGGGTCTGTGGGGTGTATTATGTATTTAGATTTAATGACGTGGAgcatgtccaaaaaaaaaaaaagcaaaaatagcaAATGGCAAATGCCCCCAGGGAGCTATTATGTcatgcaatgtgtgtgtgtgtgtgtgtattatccATGAATTGACCATTCCTGTGTATGCGTTCATGTTCATTTCATCACCCAGTCCTGTATCTTTTAACATTActtgctctctccctctgctTTTAAGCCTTTGagtatttaattcatttctctTTGCTTTTATTCACAACATGTTCCCTTCCAAGAGTCACCAAGTGCTTTCCATCTGCGTAGATCTCATTAAGATTTTATCCGTTTGTTTTCTGCCTTCTTGTTTGCCTGTTTAATTTGAGATACTGAGCTCTTACTCTGAGATGCAGGTTCGTGCGGGAgctggtgtgtatgtgtcaggATGTGTGTAGGTCATTTAGAGACCTTGTCTGCTTGCAGCATTTGCATGTTTCATCATCTTTAACCTTGCTCATCCTCAAGTGTGCTTTTAGAAAATGTCATctcaagatatttttaaacataagtgAGTTATGAAAGTTGTTTACAAAGACATCATACTTTCTTTTAAATCAGAATTAAACTTGAAACCCATCCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76204 lncRNA upstream 35607 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 50080 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 74825 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 79076 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 80179 14012098 ~ 14012315 (+) True G64102
TU76367 lncRNA downstream 143713 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 144981 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 528917 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 611046 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 826037 14977326 ~ 15011493 (+) True LOC117597182
XM_026936442.2 mRNA upstream 12458 14064494 ~ 14080036 (+) True hspa12b
XM_026936120.2 mRNA upstream 52887 14035207 ~ 14039607 (+) True nagk
XM_034303353.1 mRNA upstream 76369 13993592 ~ 14016125 (+) False m1ap
XM_034303973.1 mRNA downstream 78684 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 78693 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026937055.2 mRNA downstream 104455 14255744 ~ 14269340 (+) True brms1
XM_034304046.1 mRNA downstream 104455 14255744 ~ 14269340 (+) False brms1
XM_026936436.2 mRNA downstream 204759 14356048 ~ 14379551 (+) True LOC113540157
XR_004577999.1 other upstream 373040 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 530228 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 617457 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 673798 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1797371 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 104455 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 480741 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1871906 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2158924 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2216667 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile