Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404034.2 |
| length | 1262 |
| RNA type | misc_RNA |
| GC content | 0.41 |
| exon number | 6 |
| gene id | LOC113540508 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 27415267 ~ 27432678 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006165 | nucleoside diphosphate phosphorylation | biological_process |
| GO:0009142 | nucleoside triphosphate biosynthetic process | biological_process |
| GO:0006221 | pyrimidine nucleotide biosynthetic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004550 | nucleoside diphosphate kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85433 | lncRNA | downstream | 21601 | 27403137 ~ 27406819 (-) | True | G72074 |
| TU85431 | lncRNA | downstream | 25785 | 27401670 ~ 27402635 (-) | True | G72073 |
| TU85300 | lncRNA | downstream | 141722 | 27286239 ~ 27286698 (-) | True | G71955 |
| TU85295 | lncRNA | downstream | 144763 | 27281049 ~ 27283657 (-) | True | G71952 |
| TU85288 | lncRNA | downstream | 149053 | 27277017 ~ 27279367 (-) | True | G71951 |
| TU85454 | lncRNA | upstream | 12065 | 27444743 ~ 27445114 (-) | True | G72094 |
| TU85461 | lncRNA | upstream | 42087 | 27474765 ~ 27477666 (-) | True | tsen15 |
| TU85953 | lncRNA | upstream | 136566 | 27569244 ~ 27970795 (-) | False | G72517 |
| TU85956 | lncRNA | upstream | 446860 | 27879538 ~ 27970795 (-) | True | G72517 |
| TU85958 | lncRNA | upstream | 461835 | 27894513 ~ 27970795 (-) | False | G72517 |
| XM_026937159.2 | mRNA | downstream | 13856 | 27413456 ~ 27414564 (-) | True | insl5b |
| XM_034304155.1 | mRNA | downstream | 42887 | 27381175 ~ 27385533 (-) | True | si:ch211-107p11.3 |
| XM_034304156.1 | mRNA | downstream | 42887 | 27381175 ~ 27385533 (-) | False | si:ch211-107p11.3 |
| XM_034304154.1 | mRNA | downstream | 42887 | 27381175 ~ 27385533 (-) | False | si:ch211-107p11.3 |
| XM_026936091.2 | mRNA | downstream | 117444 | 27287161 ~ 27310976 (-) | True | LOC113539949 |
| XM_026936529.2 | mRNA | upstream | 1014 | 27433692 ~ 27441494 (-) | True | cmpk |
| XM_026936527.2 | mRNA | upstream | 14577 | 27447255 ~ 27455713 (-) | True | slc35a3b |
| XM_034303666.1 | mRNA | upstream | 44789 | 27477467 ~ 27483833 (-) | False | tsen15 |
| XM_026936469.2 | mRNA | upstream | 52099 | 27484777 ~ 27494927 (-) | False | acbd5b |
| XM_034303665.1 | mRNA | upstream | 52099 | 27484777 ~ 27494797 (-) | False | acbd5b |
| trnat-ugu_4 | other | downstream | 32197 | 27396151 ~ 27396223 (-) | True | trnat-ugu_4 |
| trnat-ugu_3 | other | downstream | 32991 | 27395357 ~ 27395429 (-) | True | trnat-ugu_3 |
| TU85245 | other | downstream | 224234 | 27203783 ~ 27204186 (-) | True | G71909 |
| TU85159 | other | downstream | 327562 | 27096602 ~ 27100858 (-) | True | G71832 |
| TU84853 | other | downstream | 877390 | 26472080 ~ 26551030 (-) | False | G71596 |
| XR_004578066.1 | other | upstream | 115074 | 27547752 ~ 27555986 (-) | False | pcyt1aa |
| trnat-ugu_7 | other | upstream | 188378 | 27621056 ~ 27621128 (-) | True | trnat-ugu_7 |
| trnat-ugu_9 | other | upstream | 192058 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| XR_003404039.2 | other | upstream | 583386 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnas-uga_1 | other | upstream | 803508 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
