RNA id: XM_026937109.2


Basic Information

Item Value
RNA id XM_026937109.2
length 3752
RNA type mRNA
GC content 0.48
exon number 3
gene id tmem102
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12464516 ~ 12478964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCGGGTTTGGTGTTGCCGTGGGAAGGCGTGTGCCGCGGAGACTAGTTGGAAATGACGGGAGCTGAAACCGGATTCCTAATCACATATCCAAACAAAACCAGCGGGGCATAAGGCACAGAGCTTGGACACTGCGAcctaGTTGTGCTCGATGGAGGCGATCAGGAGCGCAGTGACTCCGCGCGCACCGGCGCCGGTGAAGCGTGTGTCCGAGGTGGACTTCCGCTCAGGCACGGCGCTTGAGCAGCTGGCCTCGCACGTGCAGGAGCTCGTGCAGCTTGAGCAAGGCGAGTTCGGGGATCAGACTGCACTCGAGGTGCACACGGCCAAAGACTTCATCTTCAACATGCTTGGCCTGGTCCAGAAGGTGGACAAGAGGCTCCCAGTCGCAAATGAATACCTGCTATTGTCAGGTGGCGCCAgggagggtgttcttgatcttAACCCAGAGGAGCTGGGTGACTATGTCAGAGGTGTGGACTTTGACCTGGACTTCACCCTTCTGGTGCCTGCCCTCAAACTGCACGACCGCAACCAGCCTGTAACTCTGGACATGCGCCAGTCTCCACCGTGCCACTCCTGGCTCAGCTTACGGCTTTGTGACCCAGCCATGCTAGCCCGGTGGGGTATCTGCTGCGAGGATGAACCTAACATTCAGCGCCAGGAAGATGGGGAAGAGGAAGAAGGTGGTTCCATATTGGGCTCAATTCCCTCCCTCCAATCTCCACAGTCCTTGGATGGATGTTACTTCTCACCCCTGTTGGTCACGGAATGGTTTTGGAACGTAGTGGGCACAGCGGTGGAGGAGCTAAAGCGGCACCCACAAAGAGGGATTCCAGTTCCTGATCGCGTGGAACGCAATGGACCTTTGACCACACTGATCCTCAAAGCAGGCACCAGCCGTGTCCTCTATGATCTCTTGCCTGTTGTGTCGTTTCGAGGCTGGCCAGCTGTAGCGCAAAGCTGGCTCACTACCAACCACTTCTGGGATGGAAAGATCACTGAGGAGGAGGCAATCAGTGGGTTTTATCTCCTGCCTTGCTGCTCCCCAGCTGTTGGCTCGGCTTCCAGGCCAGACCGCGAATGGAGACTTGCATTTTCTCGGAGTGAGGTCCAGTTGAAAAAGTGTGTGCCTTTTCCTATGGCCGCAGCCTTCCAGGCAGCCAAAGCTGTTGTGTCCAGACTGTTGGCACGCCCCCGTACTGGTCTTAGCCTTTACCACCTGCGCACCCTACTTTTCTGGGCTTGTGACCGCTTACCTGCGGCCTACTTGAGCTGTTCAGAGCAAGAGACACCAGCCCGCCTGTTCTTGGGTCTCCTGGATGACCTGGCGCATTGTGTGCTGGGTAAAAACTGCCCCAACTATTTCCTCCCTCAGTACAACATGTTGGAACATCTTACTGACGACGCAGCCCTACTAGTGGCCCGGAAACTGGCACACTTGCGCTCGGATCCAGCTGAACATTTGCGTGCGGCACTGGAGCAAGCTCGGCAGGCATGCCAACTGAAACGAGAAGCTGCTGGGACAAGTAACGGGCACGGGGCATCATCGCCAAGCTCCAGCTCTTCCAAAGCCACCTCCCCACAAGATGACCGTCTAGCCCAGAGACTGCAACAGCTGGTTACAGAAAACCCCGGCAAGTCTATTTCGGTCTTCCTCAACCCAGATGACGTGACGAGACCGCACTTCCGCATTGACGATAAGTTCTACTGAAATGGTGGAGCCCCAGCAAGAGCACTACACACTGCCTGAGGAAAAAGTAACGCCCCTCTTTTCTTCCTTAGCCACTGAGGTAAAGCTAATAAAGTTAAGAGCACACATACACTCCTCCACTGTGCTGTACTGTATTAAACCCCTCACATGCAGGCTGGGCACAATCAGTGATGTATTTTGGCCAACACTACAGTCTGCAAGCCAGCTCTGCGAAATATGATTAAGCTGCTACTAGAGAGACCATCTGTCCCAAATCAAGTCTGCTGTCAGCTACATGGCTGTTGCTACcaaaagaaacacaaatcaCCAAATGGAGGAAGGCATAAGAGCGGCTGTTTTTGGATCCTGTATGCCATTTGATGAGAGGCCTTGAAGCTGTATTGCTCAGTGAAATCTTAATCCTGCAACCTGTGTTGGATTATAATTTCTTGCACAGCTTGAAACAATAGTTCAGTTAAGGGATTTTAAATCCTGCTACATACTGCTACGaatctctttcttttctgttatACACTGGTAAGCAGGAAGGTGGGCAATGATCTAAACCAAGGTACATTTCAAATCACTGGatgttgaatgtttttattgtaaAGGAATTTGATGGACTTTAACACTGAATATGATTTTCTTCACTCCTCTACTTTATCTCTTACTCATCTCGTTCTCTTTCTCAGGTACTTTTTGTTGTGAAGATGAAGGCATTTCCAGTGTGTATGGTATTGCCTCTGTGCCTCCTACTATTTTATTTGTCTCAAATGACAGGCAACAGTTAAAAGGCAGCCTTAGGCTAGGAAGCCATGATGGCTAGCTGATAAAAGAGAGGTTGAGATAAAGGTCTAGCAAGTCTCCAGTGCATTATTTTAAGTCAGCCTGTCTTATGCAAGACTAGACTGAGCCCCATAACTGCACTAAAGCTATATTTAGGAAAAGCCACGGGCCTGAAGCTTTTCAGAACTTGAGTTTTCTTACAACAGCATCAGCACTTAGTGCATTCCTGACACGTTTTCTGTTTACTTGCATTCAATACATTTAATCAAACAGAACCACAGAGCAAAATTCTGCCAGTGGCACAAATAAAGAAGCTCTGATCTGACTATCCTGATGAAGAAATGTCAATATTTCTGCCTGTCAAAAGATGATTGCATTAAATTTGGTAATGTGTCCTATGATTGTGTATCATGTTTGTTGGTTTAGCTTTTGACATTGATTTGCTGATTTGCTCTCAGCTTGGTGCTTGATTATATTGTAATCTCTACAATATAGATATATGATCGTAACTTTCATgctcatattttttttgtttgctatcaaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgagagaaaGCTCATAAATACAGAAGCTCctgataaatgtgttttgaacTACTCTGTAGAATTTTAGTTTCATCAGCTAAGCTAATTATGATAATAGCAAGAGAGGATGATAATAGTACACGTGTGATAGGAAAGATCCGCAGAGAAATTGgcagagtgtttgtgtgtgtggtttcggGTCAGATCTTGCTTAGCAGATGTGCCGTGGTTGCTttgggatggatggagggatggatgtaGTGAGAAACCCAGCAGCAGTCTCCACTGGCAGATTAGCCAGAAGTGATGGAGCACCTGGGAGTTCAGACAGCCGTGTCTctcactctccatctctcacgCTCTCGTAATGTCTGACTCAtccttgtttctctcttttatccatctctctccatcagaGTGCATCCTTTCTTTAGTTTTGCGTTTGACACATCCCAGAATGTAACCAGAAAGCAGAAGTCATGCTCTTGAATGATGTGTGCTGTAAAACAGGCTCATTGTGATCGTCTTCTTTTTTGAATAGCTGTAAATTGCTTGTAAATGTGATAGATTTGATAGGTTGATGTCATGCACTTGAGAGTTGGGATACTACTGAATAGACTGAAAGCACATAACTGTTGTACACttcaactgaagaaaaaaaaaagaagccaaagGATGAGTTTAGATCATGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74974 lncRNA downstream 108744 12354392 ~ 12355772 (-) True G63267
TU74923 lncRNA downstream 138845 12325460 ~ 12325671 (-) True G63219
TU74905 lncRNA downstream 186904 12272372 ~ 12277612 (-) False LOC113539775
TU74852 lncRNA downstream 341506 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 460197 12004007 ~ 12004319 (-) True G63062
TU75090 lncRNA upstream 5910 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 188477 12667441 ~ 12670500 (-) True G63502
TU75293 lncRNA upstream 230665 12709629 ~ 12709841 (-) True G63555
TU75329 lncRNA upstream 288985 12767949 ~ 12772794 (-) False G63578
TU75327 lncRNA upstream 289718 12768682 ~ 12797341 (-) True G63578
XM_026935993.2 mRNA downstream 47732 12357775 ~ 12416784 (-) True fgf11a
XM_026936130.2 mRNA downstream 112368 12326466 ~ 12352148 (-) True chrnb1
XM_034303436.1 mRNA downstream 141087 12310158 ~ 12323429 (-) False chrnb1l
XM_026936949.2 mRNA downstream 141270 12309531 ~ 12323246 (-) True chrnb1l
XM_034303437.1 mRNA downstream 141270 12310178 ~ 12323246 (-) False chrnb1l
XM_026936858.2 mRNA upstream 5759 12484723 ~ 12489562 (-) True tmem256
XM_034303765.1 mRNA upstream 201397 12680361 ~ 12691838 (-) True LOC117597087
XM_034303764.1 mRNA upstream 218795 12697759 ~ 12707044 (-) True LOC113540289
XM_026937075.2 mRNA upstream 231227 12710191 ~ 12712844 (-) True ufsp1
XM_026936940.2 mRNA upstream 255682 12734646 ~ 12736518 (-) True pop7
TU74901 other downstream 186847 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 186904 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 186904 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 215460 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74378 other downstream 929503 11533764 ~ 11535013 (-) False LOC117597110
XR_003404098.1 other upstream 725309 13204273 ~ 13204462 (-) True LOC113540725
XR_003404087.1 other upstream 1424867 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 1428873 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 1430203 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 1753845 14232809 ~ 14243681 (-) True G64436

Expression Profile