RNA id: XM_026937110.2


Basic Information

Item Value
RNA id XM_026937110.2
length 793
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113540546
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26981189 ~ 26982209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGATACCCCTCCTCACACTTCACCACAATCCTAACAATGATCTTGATGCTGAATTTGATTTTCCTGCTCTTTGTGAGCACAAACCAGGCAGAGGACATTTTGGAGCCATGCGTAAGCAGCTTTGTGTCAGAACTGAGGAAGATCAAAACCTTAGAGGCTGAAATTCAAGAGCTCAGGAAACAGATCACAGAACAACCCAAAGTGGCATTCTGGGCCATACCTTCCAGTGATACTAATGCAATTGGACCATTTCAGGAATATCAGATTCTGGtgtacaaaagtgctttgaccAACATTGGTAATGCCTATGACACAACAACAGGTATCTTCACAGCACCGGTGAGAGGAGTATATTACTTCAACATTGTGGTTTTCAATGCAAACTCCCTTGCAACTGGTGTGCATATAATGAAGAACGGAGTGCGTGTGGCAGCAATAACAGATAATGTACCGGGACAGGACAGTGAGGACACAGCGAGTAACTCAGTCACTCTGCTGCTTGAGAAAGGAGACCGGATTTACAACGAGCTCCTGGTGAACCGGAAAATTTACACTGATACAGGAAACCGTAATTCATTCAGTGGCCATCTTCTGTACGCAATGCCCAAAACTCACTAAACACTGATGCACACATTGATCTGGAGACATTAGTAATGTTGAGATGATATCAGTGAAGTGGCAGAATGCTGCCGCTCATTTTATCCAtagtataaaattattaaaaaaagattataagttcataataattgaaaaatcatcataacagcaaataaaaaaaacatgcatacaAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85066 lncRNA downstream 45992 26934990 ~ 26935197 (-) True G71765
TU85065 lncRNA downstream 85625 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 121734 26847346 ~ 26859455 (-) True G71734
TU85022 lncRNA downstream 124517 26853267 ~ 26856672 (-) True G71732
TU84994 lncRNA downstream 284092 26696893 ~ 26697097 (-) True G71707
TU85140 lncRNA upstream 49108 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA upstream 49108 27031317 ~ 27035852 (-) False G71815
TU85185 lncRNA upstream 160897 27143106 ~ 27151314 (-) False G71854
TU85183 lncRNA upstream 166701 27148910 ~ 27151314 (-) True G71854
TU85228 lncRNA upstream 191843 27174052 ~ 27174536 (-) True G71892
XM_026936874.2 mRNA downstream 47670 26917159 ~ 26933519 (-) True prkci
XM_026936963.2 mRNA downstream 67609 26903908 ~ 26913580 (-) False skila
XM_026936961.2 mRNA downstream 67609 26903908 ~ 26913580 (-) True skila
XM_026937244.2 mRNA downstream 91853 26881468 ~ 26889336 (-) True nadkb
XM_026937243.2 mRNA downstream 91855 26881468 ~ 26889334 (-) False nadkb
XM_034303296.1 mRNA upstream 123285 27105494 ~ 27108411 (-) False tmem125b
XM_026935890.2 mRNA upstream 123285 27105494 ~ 27108411 (-) True tmem125b
XM_026935891.2 mRNA upstream 123285 27105494 ~ 27107789 (-) False tmem125b
XM_034303292.1 mRNA upstream 126603 27108812 ~ 27143851 (-) False cfap57
XM_034303294.1 mRNA upstream 126859 27109068 ~ 27143851 (-) False cfap57
TU84853 other downstream 430159 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 430159 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 605101 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2676263 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2944335 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 114393 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 221574 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 413148 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 413942 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 446211 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile