RNA id: XM_026937164.2


Basic Information

Item Value
RNA id XM_026937164.2
length 1387
RNA type mRNA
GC content 0.46
exon number 2
gene id sox32
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21399555 ~ 21401268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGAACTCTGGGATTGACATGAGCAGGCTGAAGAAGTCTTAAAGACAGTCATGTACTTTGACAGAATGTTTCCCTCTCTGGACATGGGAGCCATGCAAGAAATGCTGGAAAGCGAGCAGCGCTGTTACGCACCGTCTGAACAGCCCGAGGTTCCTGTGTCAGGGCCTTCCAGCCCGGCATCGGCTGAGTCTGAGCTCAGCTGCTCCAGCCCGGAAACCAAACCGACACCGGAAGCTCGAGTGAGGAGACCTCTGAACGCCTTCATCATTTGGACGAAAGAGGAGCGCAGACGTCTTGCACAGCTCAACCCAGATCTGGAAAACACCGACCTGAGTAAAATACTTGGTAAGACCTGGAAAGCCATGTCTCTGGCAGAGAAACGTCCGTACATGCAGGAAGCAGAAAGACTGAGGGTCCAACACACTATTGACCACCCCAACTACAAATACCGTCCCCGTCGGCGCAAGACCAACAAGCGTGCTGCCAAGATGCCCTCACACGAAACCAATGTCTCACCCAACTTCCACCTCAGCTATATGCTCCAGAACCAAGCTCTTCAatatccatacacacactcacacacactccctaactcatacacacaccctcatgGTCCCAGTTTCCAGCATCATCCTGTCCCTTCACAGAATGGAGCAACATTTACAAATGGAGGGTTAACGTTCCCAGATGGAGCAGTGCTCTTGAACTCGTCTTTAGCATGCCCGCAGCAGTCTGTGTACTCAGCAGAACCCCAGCTATACTACAGTTCCCAGCATGCAGTGCAGCAGAGAGGAGAGCAGTGGAATTGGCGGGGGGAAGAAGTGTGTGCTTGTGTCCTGTGTTCAGGTGGACCGTCGTTAGAATTTTACCTGGAACAGGTACGAGTGGACATGCTGGACCAGCTGGATCGCAGTGAGTTTGACCAATATCTCAATCCTGTCCAGCCTAAAGACCAACACTTCCAATGAACATCACAAAGTGACCACACTTCCGTCTTATAACCCAACAGACTCTGCAGTAGGGCAAACCACAGAGTGGCCTGTTTGGTACAATATATTTTCTGTTACTGTTGCTTctaaaaagagatttttttaaaaagatgtgattgtctatataaatatttgtatttatttatgatgtttattGGTGCCTGAATACAGAATAACCTCTCTCAGGATTAAATCTCACTGTCAGTGTGGACTCCAGAAAATATTCTAAGATGTGTCATCTGCCTCACTTTAAATTGTTTAATCGTTGCTGCTTTTTTGTCTCAGAGATTTATAAGATCAGCATATTTCAATGTACTTTTGGaatgtgtatttattacttGTTGACTTGTGGGAAAGTCCAGTTACAgattctataaataaaacatttaaatataa

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007493 endodermal cell fate determination biological_process
GO:0007498 mesoderm development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001885 endothelial cell development biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0001889 liver development biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81220 lncRNA downstream 70305 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA downstream 70305 21326076 ~ 21329250 (-) False G68462
TU81229 lncRNA downstream 78409 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 85682 21304764 ~ 21313873 (-) False chchd7
TU80840 lncRNA downstream 595451 20803417 ~ 20804104 (-) True G68186
TU81263 lncRNA upstream 5843 21407111 ~ 21408207 (-) True G68495
TU81290 lncRNA upstream 70364 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 71551 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 73319 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 95664 21496932 ~ 21501433 (-) True G68585
XM_026936104.2 mRNA downstream 19596 21376395 ~ 21379959 (-) True sox17
XM_034304122.1 mRNA downstream 28545 21354619 ~ 21371010 (-) False LOC113539989
XM_034304123.1 mRNA downstream 28545 21363925 ~ 21371010 (-) False LOC113539989
XM_026936370.2 mRNA downstream 48744 21337108 ~ 21350811 (-) True LOC113540120
XM_026936598.2 mRNA downstream 85658 21304692 ~ 21313897 (-) True chchd7
XM_026936006.2 mRNA upstream 12593 21413861 ~ 21417828 (-) True mrpl15
XM_026936203.2 mRNA upstream 25917 21427185 ~ 21430580 (-) True LOC113540027
XM_026935849.2 mRNA upstream 79347 21480615 ~ 21485813 (-) True fastkd3
XM_026935851.2 mRNA upstream 79347 21480615 ~ 21485666 (-) False fastkd3
XM_026936692.2 mRNA upstream 86919 21488187 ~ 21492336 (-) True myl12.1
XR_004578106.1 other downstream 28545 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 28545 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 28551 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 70305 21326046 ~ 21329250 (-) False G68462
XR_003404107.1 other downstream 1255666 20143784 ~ 20143889 (-) True LOC113540737
trnaa-ugc other upstream 16900 21418168 ~ 21418239 (-) True trnaa-ugc
TU81579 other upstream 533258 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 1230917 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1892683 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 2078697 23479965 ~ 23483850 (-) True LOC117597073

Expression Profile