Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026937185.2 |
| length | 1143 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 7 |
| gene id | uck2b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28686556 ~ 28690012 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0044206 | UMP salvage | biological_process |
| GO:0044211 | CTP salvage | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | molecular_function |
| GO:0004849 | uridine kinase activity | molecular_function |
| id | description |
|---|---|
| K00876 | udk, UCK; uridine kinase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86306 | lncRNA | downstream | 17913 | 28667323 ~ 28668643 (-) | True | G72796 |
| TU86223 | lncRNA | downstream | 214785 | 28397661 ~ 28471771 (-) | True | G72726 |
| TU86202 | lncRNA | downstream | 303096 | 28343134 ~ 28383460 (-) | True | G72709 |
| TU86215 | lncRNA | downstream | 307424 | 28365657 ~ 28379132 (-) | True | G72720 |
| TU86175 | lncRNA | downstream | 486747 | 28199219 ~ 28199809 (-) | False | LOC117597043 |
| XR_004577998.1 | lncRNA | upstream | 23022 | 28713034 ~ 28717955 (-) | True | LOC117597077 |
| TU86345 | lncRNA | upstream | 92911 | 28782923 ~ 28784140 (-) | True | G72824 |
| TU86322 | lncRNA | upstream | 97611 | 28787623 ~ 28791829 (-) | False | LOC117597168 |
| TU86430 | lncRNA | upstream | 142372 | 28832384 ~ 28833720 (-) | True | G72893 |
| XR_004577988.1 | lncRNA | upstream | 202004 | 28892016 ~ 28896799 (-) | False | LOC117597038 |
| XM_026937186.2 | mRNA | downstream | 980 | 28682472 ~ 28685576 (-) | True | czib |
| XM_034304106.1 | mRNA | downstream | 5852 | 28668979 ~ 28680704 (-) | True | scp2a |
| XM_026936934.2 | mRNA | downstream | 34131 | 28648324 ~ 28652425 (-) | True | LOC113540437 |
| XM_034304008.1 | mRNA | downstream | 44161 | 28632754 ~ 28642395 (-) | True | dcaf8 |
| XM_034304007.1 | mRNA | downstream | 44162 | 28632754 ~ 28642394 (-) | False | dcaf8 |
| XM_026936878.2 | mRNA | upstream | 9657 | 28699669 ~ 28706523 (-) | True | zte38 |
| XM_026936341.2 | mRNA | upstream | 18017 | 28708029 ~ 28711708 (-) | True | prdx1 |
| XM_034303626.1 | mRNA | upstream | 18017 | 28708029 ~ 28711089 (-) | False | prdx1 |
| XM_034303624.1 | mRNA | upstream | 32838 | 28722850 ~ 28736753 (-) | True | si:ch73-182a11.2 |
| XM_034303625.1 | mRNA | upstream | 35808 | 28725820 ~ 28736753 (-) | False | si:ch73-182a11.2 |
| XR_004578096.1 | other | downstream | 34131 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| trnas-uga_2 | other | downstream | 449751 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| trnas-uga_1 | other | downstream | 450289 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
| XR_003404039.2 | other | downstream | 644771 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnat-ugu_9 | other | downstream | 1061748 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| XR_004577984.1 | other | upstream | 183566 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004577982.1 | other | upstream | 183568 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
| XR_004577983.1 | other | upstream | 192315 | 28882327 ~ 28884965 (-) | False | LOC117597037 |
| TU86878 | other | upstream | 458626 | 29148638 ~ 29152381 (-) | False | usp33 |
| XR_003404076.1 | other | upstream | 833382 | 29523394 ~ 29523466 (-) | True | LOC113540702 |
