RNA id: XM_034304099.1


Basic Information

Item Value
RNA id XM_034304099.1
length 2178
RNA type mRNA
GC content 0.53
exon number 10
gene id men1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20447256 ~ 20455462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTTCTTCCGCAGCCATCTTGGTGCAACTGATTTCTCATAGTACGGATGGGACTGACTCTGCTTTAGTGTGTGATAGTGTTGAAGGGATATTGTATGTTGCTTGAATGTTTTTCTAGGTTGGATTCACTGTGTTGCGCGGCAAAAGCGAGggacaaaacaaaagcatgtgAACATAATTTTCAGCTCAGGTGTGTATGACAGACACGGTTTAGAAACAGAGGAAGAGACAAAACAAGGATTAAGAAGGCAAACGAGATAGTGATATTTGCTGGTAGCATAGTAGTTCTAGTGCAACAGGTCCCTTCCTGAAATTCAGTCCCCAGACATGGGCCTGCGGTCAGCTCAGAAGAAGCACTTCCCCCTGCGGGGCATCGATGGCGTGGTGCAGCTCTTTGAGTATGAGTTGGGAAACCCCGAGCCAGATCTGGCCCTGCTATCTCTGGTGCTGGGCTTCGTCGAGCACTTCCTGGCAGTCAACCGCGTGGTGCCTGTCAACGTCCCTGGAGTGCGATTTGAACCCCTCAAAGGCGACTGCCTCAACTCCTGCTTCCCTACAGTAGAGCTGGGTTTAATATCAGCCCTGCATGAACGCTTCACAGCTCAGATCCGTGGTGCAGTGGATCTGTCGCTGTACCGCAGGCCGGCCGCAGGTTCAAGCAGAGAGCTAGTGAAGAAGGTCTCGGATGTGATCTGGAACAGCCTGAGCCGATCATACTTCAAAGACCGAGCCCACATTCAGTCTCTCTTCAGTCTCATAACAGGCACAAAGTTGGACAGCTCTGGTGTGGCGTTTGCAGTGGTGGCTGCGTGTCAGGTTCTGGGGCTGAAGGATGTTCACCTCGCCCTGTCTGAGGACCATGCCTGGGTAATCTTTGGCAAAGGGGGTGAGGAAACAGCTGAGGTCACATGGCACGGCAAAGGCAATGAGGACAGGAGAGGCCAGACAGTCAGTGCTGGAGTCAATGAGAGGAGCTGGTTGTATTTGAAAGGATCCTACATGAAGTGCAACCGCAACATGGAGGTAGCGTTCATGGTTTGCGCTATCAACCCGTCTTTAGATCTACACACAGACAGCTCTGAGCTGCTACAGCTTCAGCAGAGGCTGCTTTGGTTGCTGTATGAGCGAGGAGACTTGGACAGGTATCCAATGGCAATGGGTACACTCGCTGACCTTGAAGATCAAGAACCTATCGGCAAAGGAGACCCTCTCTCAATCCATCTCAAGGCTGTGGAGTCCGCCAAGAAGTACTACAACAATGAGCATATCTACCCGTTCATGTACTTGGCTGGATACCACTACAGACAGAGGAATGTGCAGGAGGCTCTGAGGGCCTGGGCCGAGGCTGCTACAGTCGTGCAAGATTACAACTACTGCCGTGAGGATGAGGAGATCTATAAGGAGTTCTTCGATATAGCGAATGATGTCATCCCCACCCTTCTCAAAGAGACTGCTGCTGAGAATGGAGGAGAAGGCACTGAGGGAGCAGAAAAGGACCAACCAAGACAGGCTGCAGCCCTCTCTGCCTTACAGGACCCAGAATGCTTTGCACACTTGTTGCGTTTCTATGATGGAATCTGTAAATGGGAAGAAGGAAGTCCCACACCCGTGCTTCACGTCGGCTGGGCCACCTTCCTAGTTCAGTCTCTTAGCCGCTTCGATGCTCAGATAAGACAGAAAGTGACAATCATCACCAAAGAGTCAGAGCCGCAAGATGACGATGACCAAGCCAGTGACGACCCCCGCGAGGGCCGAAGAAGAGGGCCACGACGTGAGTCCAAAGCTGAGGAATCGGCAGGACCCTCTCCACCAGCTGCTACTGCAGCTCCTCCCTCCCAGCCTGGCCAGCCCAAAAAAGTGGGTGGAGAAGGGGGCCGCCGTCGTTCTTCAGCTGGAGGAcgagggaaagagacagacgGGAAGAATGAAGCATCTTCCCCAAACAGTCCTGTTCCTTCCCCTACTCAAGCAGTGGTAGCCTCCAGTGGGCCTGTGGTGTCTTTCCACAGTGAGAAGATGAAGGGCATGAAGGAGCTGCTCTCGGCAGCCAAGATCAACTCAAGCGCCATTAAGCTGCAACTCACTGCCCAGTCACAAGTTCAGATGAAGAGGCAGAAACCCACCCCCTCCGGCGACTACAGCCTGTCCTTCATGAAACGCCCTCGCAAGACTCTCTAG

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80460 lncRNA downstream 120096 20297322 ~ 20327561 (-) True G67891
TU80315 lncRNA downstream 315620 20127626 ~ 20132037 (-) True G67757
TU80274 lncRNA downstream 380598 20066063 ~ 20067059 (-) True G67719
TU80085 lncRNA downstream 566091 19880163 ~ 19881566 (-) False zgc:112271
TU80065 lncRNA downstream 616907 19830550 ~ 19830750 (-) True G67562
TU80702 lncRNA upstream 103916 20559378 ~ 20566758 (-) True G68075
TU80707 lncRNA upstream 114937 20570399 ~ 20570930 (-) True G68080
TU80738 lncRNA upstream 174704 20630166 ~ 20631710 (-) True G68106
TU80745 lncRNA upstream 180070 20635532 ~ 20635793 (-) True G68107
TU80746 lncRNA upstream 180442 20635904 ~ 20636199 (-) True G68108
XM_026937087.2 mRNA downstream 2708 20425591 ~ 20444949 (-) True map4k2
XM_034303463.1 mRNA downstream 28628 20413925 ~ 20419029 (-) True LOC117597004
XM_026936477.2 mRNA downstream 223789 20165711 ~ 20223868 (-) True focad
XM_026937203.2 mRNA downstream 304127 20132759 ~ 20143530 (-) True ndufs2
XM_026936930.2 mRNA downstream 481806 19962582 ~ 19965851 (-) True snrpf
XM_026936378.2 mRNA upstream 23798 20479260 ~ 20485658 (-) True si:dkey-106g10.7
XM_026937254.2 mRNA upstream 42218 20497680 ~ 20504408 (-) True ecsit
XM_026935869.2 mRNA upstream 206264 20661726 ~ 20677144 (-) True peli3
XM_034303290.1 mRNA upstream 206264 20661726 ~ 20675403 (-) False peli3
XM_026936122.2 mRNA upstream 300414 20755876 ~ 20768426 (-) True sstr1b
XR_003404107.1 other downstream 303768 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 481819 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 504290 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 870584 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 912788 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 912788 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 912788 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 962706 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile