RNA id: XM_026937207.2


Basic Information

Item Value
RNA id XM_026937207.2
length 6068
RNA type mRNA
GC content 0.44
exon number 12
gene id stim2b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15826058 ~ 15875484 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agctcacCCCACGGAGAAaaacttgtgtgttttgtgtggcTAAGCGGCATTGTGTTGATGCTGGGCAAGCTGGGACTGAGCTGTCACCGTTTGTTGGGGCGAAAACGTCGCGTTTGGTCCTAACATGAGTGAAATGAGCGTGCTGAGTGACGCGAGCTGACTCTTCAGCCATGTAACATGCAGCATGTTTGCCGGCGAGAGCAGTGCAGGAGGAAGTGCTGGACAATAGATCAGCGAGGTGTGTTTCCGTGTTTGCGCGTCAGTGTgccaggaggaggaggaggaggaggattcCCACTAACAACTTCTGGCGCGTGCTCTCTTTCACATTCCTCCACTGTCATACTTCACCTCATCCAGATATCACTCTGATAAATACACGCTACTGTTCACTGCGGGGAGGGGGTGCTGTATTAATTATGATGAACTGGGAAAAACTCAGAGCCTAAGCAGGAGCTCAGTACCAGTGTAGACTCTGTCGTGTTGATTGCAGCGCCTCATGTTGTGAAGCGATTTGCATAAGGACTTCCGCCCCTGCCTGCCTTTGACTTGTGCACCGAGCGCCAAGCCGCTGAAGCGATGCCGCACGCTGACACCCTCCGAGCCGGCACAACACCCTGCTGATCCGTGCCAGATGTGTCCTGGAAGGCCGTAATGATTTGGCTGTGTTCAGAGTGGATTTGCATGCACTGGAAGGACGGGATGTGACAGTGTAACTCGTGGAGGCGGATCTTCTTGACACCGTGTATTCAGTTGACTATCCTGAAGGGACTACACACGATGTTCGCCTCCTCTCTGTGGAACTATAGAGATTATTTGGTTTGAGGCCGGACTCTTTAAACCGCACTGGATGCATAGTAACCTGCTTTTTGGGGCTGTTTTTGTGCACCTGGCTGGAAGAGATGTTCCTGAAATGGCAATTCTTCCTCAGTACTTCACACTTTTGTCTTTGGGACTTGACTTAGGAAGTAACTGAGGTGTTAGTTAAGATAATAGAgcggcttaaaaaaaaaataataataatttttatcaGACTAGCACACAAATCTGTAAACAGGCTAGTCATTAATgcaatgatgtttttttttttgaagagtcAGTCTGGCGCAGTATGAGCCATTTTGGACCGAGTTTGGCTTCTTAAACAGgcttttaatgttaaatacagaCTTCTCTGAGACCCAGAGAGACTCTGCaggacatttttaattaaagtagttgtgtatgtgttgtttttCGAGCTAATACACAGCGTTAGCGTCTATGCGCTGGTGTTGTGACTGTGGTGTCTGGCCTCGCTTTGTGGGGAATTAAGGCGACACTTTCCCCGACACTTTGGACAGCAACGCTGGCTTGATTCTTCCAGAAAATTCACTaagccctgttttttttttgtgtgtgtgtgtctgtgggaggAACAGAAAGCTTTTGGTCTTTCCATCATGTCTCACTTGTCTGGGTTAGCACTCGCTTTGCTACGTGGACTGCTCATCTGTGCGCTTGTGGGATTAGAGCTGAGCTTCTCAGGAGCTCTGGCTTCTCCAGACACCAGCATCGTGTCACCTCCAGatccGTGTCTGACTGTGATCCCACCCTGCATGAACGAAGCTGATCGTTTCAGCCTTGAGGCACTGCGGCACATCCACAAGCAGCTGGATGATGACAACGATGGCGGCATCGAAGTCAATGAGAGCGTGGAGTTCATCATCGAGGACATGAAGCAGCAGCAAACGAACAAACACAGCAACCTGCACAGAGAGGACCAGCACATTACTGTAGAGGAGCTGTGGAAAGGATGGAAGACGTCTGaagTTCATAACTGGACGATGGACGATGCAGTCCAGTGGCTGAAAGAATCGGTAGAGCTTCCACAGTACGAAACAAACTTCAGAGAGTTCAGAGTTAATGGCAATACGCTACCtcgAATAGCGGCTAACGAACCTTCGTTTATGTCATCACAACTAAAGATATTAGATCAACGAcataaacagaaattaaatttgAAGGCGCTGGATGCTGTGCTGTTTGGACCACCATTACGGCCACAGCATAACTGGTTGAAAGACTTTGTCCTCATGGTGTCCATCATCATCGGGGTAGGAGGCTGCTGGTTCGCCTATGTGCAGAACAAGTCCTCCAAAATCCACATCTCGCGCATGATGAAGGACCTGGAGAGCCTGCAGAGCGCTGAACAGAGCCTGATGGAGCTGCAGAGCAGACTGGAGAAGGCACAAGAGGAGAATCGCACGGTGGCAGTGGAGAAGCAGAACCTGGAGCAGAAGATGCGAGATGAGATCAATGGTGCAAAGAGGGAAGCTCACCGACTGCGAGAGCTCCGCGAGGGAGCCGAGTGCGAACTCAGCCGACTCAAATACGCCGAGGAGGAACTGGTGCAGgtgcGTGTGGCATTAAAGCGAGCAGAGAAGGAGTTACAGTCAGAGCGGTCAGTTCCCGAAGCCTTACAGATGTGGCTGCAGCTCACACACGAGGTGGAGGTCCAATACTACAACATCAAAAAACAGAATGCTGAGCTCCAGCTCACTGTTGCCAAGGAagaggcaGAGAAGATAAAAAAGAAGAGAGGTTCTGTGTTTGGTACTCTGCATGTAGCTCACAGTTCGTCACTGGATGAGGTTGACCACAAAATACTTGAAGCCAAGAAAGCCCTGTCTGAGGTGACAGCATGTCTGCGTGAGCGTCTTCATCGCTGGCAGCAGATTGAAAGATTGTGTGGGTTCCCTGTGGTGCAGAACTCAGGTCTGCCAAGCTTGAGTGCATCACTCTACTCCGAGCACAGCTGGGTGGTGATGCCACGTGTCTCACTGCCCCCGTACCCCATTGCAGGGGGAGTGGACGACGTGGACGAGGACACGCCCCCCATCGTCCCACAGTTTAACTCTCCACTGGCTCGTCCTCCTCTGCTGCGTAACAGCAGTTTGTGTCGCTCTCGGCGGAGTCTCCTTTCCCATCAAGCTTCTCTTGTCTCGCCCGATCCTGACCTGCTGTCTATGGCCTCAGCACCAGGCGTCTACAGACCAGAGCCAGATGacgaacacatttttttcagcattgaCACAAAAAGAGACTCTCAGGACACATGTTCAGATTCAGACTCTCTAAGTTCCTCCCTGGGAAGGAAGCAGTTTTCCAGCTCCTGCACTCAAGGAGCAGAAACGCCGCAGCGCAAGATCTCCCGCGATGAGCTCCTCTTGTTGGCTCAGGAAGCACAAGCCACTGCCTTGGAAGCCACCATCTCGTCACCACCTCCAGCTTCATCGACCGCTGACCCCACCTCAATCCACAAGGGCTCACCTGACCTCACCCGTTCTGCTATCCCAGAATCACAGAGTTTGACCTTTCACCCTGCCACTAAGGTGGCAGCTTATAACGGCATGCTGGAGAAGTCATACAGCTTGGGCCAGTTGTCTGCTGGCGGGACGCCCCCAGAGGGACGTTACACTTCCCTAAGCTCTCTAGACATGGATGGAAAGACAAGCAAAGAGGCCAAACAGCTCCTGTCTTCCTCCAGTCCCCCAGACTCCTGCGACAACCCTGAGAAAAAGCGCTCAAAAATCAAGAGCTTATTCAAGAAGAGCAAAAAGCAAtgaaggaaaagagaggaaaattaGACGAAGACATGAAAAAGccttaaaacaaatgaaaaatgtaatggACTGTCAACCAGATGCCAAAATGTTTagttctatttttctttcttttttatattttatttttattaaaacagaatGTAGCTCCGTCTAGGTGCTATCCTGGGTTGGAAGCGTTTATAGTCCACTTGGACTGGCATGTTGTCATTCAAACATCACAAATGGTCAAAAATCAAGggtcatttttgtcattttaaaattgttcaCTTCTTTCTACATTGTGGTTTTAGGGTTGACTGTGAGAGGTGGATTATCATAAAGCACCAAACAAATATTATACTAACATAAGATGTAATACAAATCCAAGTTATTCAAAGAATAACATACCTTATCAAAAAATGTCATCTCTACTGTAACTTACATTATAGGCCATGTGAGTGGACAGCTGTTCCTTTGAGAAGCTTGTTTGTGTAAgtaataaaccaataaaaagtCCTACATTACAAATTTAGTCAAATTTCGAAATGCTAATGATATAATTGAAAAtgctgtatataatatacagggcattgcataaatatttgcctgtcttttccacattttgtagtgttacaacttgGAACTGACATGGACGTAATTAGgattacaccgatcagccattacattaaaaccacctgcctaatagtGTGTAGGTCCCCagtgtgccaccaaaacagctctgactgcTTCCCCCATCTGGGCTGTTGATCTCGCCAACGCTAtcagagttacccttggcctcttgggtGATTCTTTGACTATTGCCCTTCTTAACCACTTGCTGACATTTGGTGGATGACTTTCTTTAGGCAGAATCGCAGTTGTGCTCTATTgtatccattttttaaataatggactTAATGCTGCTTTGCAGGATGCTCAAAGTTTGAGATAACTAATTTCACAGCAACAGGATGAATACTTACGCAaacttttacattatttatttgtaaataattttgaagactatattgatttttgggcccacttcaatattatgggatattttgtatggattcatgacatataatcccaattaagccCATTTGAAtaccaggttgtaacactactaACTGTGGAAAAGTTCGGGAGGGTGAATACTTAGGAAAAGCACTCTATGTGCATCTGTCATTGTCACTGTCTAATCCTGGTGCCTTTTGCCTATCCACCTCAACAATGTCAACTGTTTCCTTAGTTTGTGgattaataatgataaacatgatgaaacattactgaatttgtttttgtttgttggttggttttTGATCATAGAAGTGATCAGTTTGGCTCTAGTGTTCTGGAGGTAAAACCAAAAAGAACCCATAATTGTGAAGATGTAGGGTTGAATGTGGGCTTTCAGCTCtatgtcatttcctgtttactGATGCCTCAGAGCCCCTGTACTTGACTAATTACCTTtaaggtaagaaaaaaaaaggtaagacAGAGGTAGCACTTAGTCTTaagcagacagacagtcatAATGCCTGAATAATACAGTCATGAGCATGACGAGCAGAGGCTATACAAGTAAGATTTCAGCAAGTACAAATGATGGTCTTTTTGATTTTTCACCAAATCTTATGACTTGTATAACAAAACCTATAAGTTGTAAAATTGACTATGTTATAAGGGCATAATGACTGGTGCAGATAAAGTGCTACCAAAATCCTGCTAAAGGTTGTTGCACTACTGCTTTCCTGATTTGGAAAGGGCTGCTTTTTCGCAGAGTAACAGTAAGTTTAGATACATAAGAGAGACGCGCTAAAGAAGTAATAAATTGATGGAGTCAAAATGATTTGATGCATTTAGAACGCTTCTTAGCTTATTTATTCTTCAgtgcattctttattttttttttcccatgacaACGATGTtcagatagattttttttaaaaactgtcgAACATGCATTTGTAATGTGTGGAAGGactctgtattttatatatgcaTATGCAAATTTTAACAACTCATTAATAACGCCTATTCCTTGGACTGAATGCTCTGTTTCAAGGGCCTAACCATCACTGTGATCACAATCCTCATCCTAACGCACTGTAATACATAGCCTGGCCCTAAACGTATGTTATTTTGACAAACATTGTCACAggcttttattttactgttatttataaAGTGTCTCATGTATGAGAATTTGAGTCATCCTGAAGCCATCACTTAAGGAAGGATATTGTACAATCGTGCTGAAAAAcgaaaaatgataaatatgtgtaaaacaATACACCTATTTAACATAAAAGTGCAACAGACTATGGGCATCGATGTGGGAAATGTCTATGGTGTGTATGCCCTTACATTAGTTAAACTGTTTTATGTGTAAGAGGAAACCAGGGCTAAGTAGGTATGATCATAGTGAAATATTTCTTATGATTTCAGATGAATAAAAATTTGTATAAGCCA

Function

GO: NA

KEGG:

id description
K18196 STIM2; stromal interaction molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76907 lncRNA downstream 624513 15201298 ~ 15201545 (-) True G64964
TU76869 lncRNA downstream 857519 14967207 ~ 14968539 (-) True G64929
TU76798 lncRNA downstream 963859 14861924 ~ 14862199 (-) True G64860
XR_004578094.1 lncRNA downstream 1193305 14622036 ~ 14632753 (-) True LOC117597192
TU76369 lncRNA downstream 1530359 14295494 ~ 14295699 (-) True G64461
TU77240 lncRNA upstream 30610 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA upstream 48970 15924454 ~ 15925161 (-) True G65260
TU77256 lncRNA upstream 106252 15981736 ~ 15982273 (-) True G65267
TU77227 lncRNA upstream 114065 15989549 ~ 15991516 (-) True smim20
XR_003404045.2 lncRNA upstream 317608 16193092 ~ 16196596 (-) True LOC113540579
XM_026936693.2 mRNA downstream 380286 15310629 ~ 15445772 (-) True pcdh7b
XM_034303872.1 mRNA downstream 932903 14875694 ~ 14893155 (-) False dthd1
XM_034303871.1 mRNA downstream 936669 14875695 ~ 14889389 (-) False dthd1
XM_026936681.2 mRNA downstream 939646 14875695 ~ 14886412 (-) True dthd1
XM_026936682.2 mRNA downstream 939649 14875697 ~ 14886409 (-) False dthd1
XM_034304110.1 mRNA upstream 3987 15879471 ~ 15904267 (-) False tbc1d19
XM_026936113.2 mRNA upstream 3988 15879472 ~ 15904355 (-) True tbc1d19
XM_026936418.2 mRNA upstream 43364 15918848 ~ 15963968 (-) False rbpjb
XM_026936417.2 mRNA upstream 43364 15918848 ~ 15963967 (-) False rbpjb
XM_034303817.1 mRNA upstream 43364 15918848 ~ 15963798 (-) False rbpjb
trnae-cuc_13 other downstream 1091331 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 1582377 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 1916701 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 1918058 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 1922037 13903831 ~ 13904021 (-) True LOC113540713
trnap-ugg_2 other upstream 343 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 3987 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 98095 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 179538 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 543826 16419310 ~ 16423164 (-) True tnfsf12

Expression Profile