RNA id: XM_026937228.2


Basic Information

Item Value
RNA id XM_026937228.2
length 1640
RNA type mRNA
GC content 0.52
exon number 12
gene id eif2b3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24919527 ~ 24963880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTCCGGGCTGTTTCAAAATAACGGCACGGGTGTCATCATGTTAGCTACTTGGCTAGCTAGTGAGATTTTCTGAAGCTGAAAAAATTCCTTTATGTTACTGTAGAGCCTCGAACATTTGCTGAATATTTCCTGAATATTTTGTCTTTACCTCGCCGGGGTTGTTTCATTACACTCATTGTGGAGTTTTTGCATTTCTGCTGGAGATTACTGTCAGCTGGAGCTGAATGCTAACCGCGCAGTAGCTTGCATGCGTTACTGCTGAACAGTGGATTAAGATGGAGCTGCAGGCGGTGCTGATGGCTGCTGGTGGTGGGTCGCGCATGATGGACCTGACCTACAACACCCCGAAACCTTTACTGCCTGTGGGCAACAAGCCGCTCATCTGGTACCCGCTCAACCTGCTGGAGAGAGCCGGCTTTGAAGAGGTCATAGTGATCACCACCAAAGAAGTGCAGAAGGCACTGAGCATGGAGCAGCGAGTGAAGCTGGATGTGAAGATGAAGCTGGACGTGGTGTGTATCCAGGAGGAAGCGGATATGGGGACTGCCGACGCCCTACGACACATTCAGCAGAAGATCAAGACGGACATCCTGGTGGTGAGCTGTGACCTGATTACGGACGTGGCGCTGCATGAGGTGGTGGATCTTTTCCGAGCCCACAATGCCACGCTTTCCATGCTCATGAGCAAAGTGCATGAATTCACAGAGACTGTCCCCGGgcagaaaggaaagaagaaagcagGAGAGCAGCGGGACTTTGTGGGAGTGGATGGCACGGGGAAGCGGCTCCTCTTCATGGCTAACGAAGCGGACCTGGAGGAAGGGCTTGTCATCAGGAAGGCCATCATGCGCAAacatcCCAGGATGCACATCAAGACAGGCCTCCTGGACGCCCACCTGTACTGCTTTAAGAGATCCGTGGTTGACTTTTTAGTCGACAACAAGTCCATCTCTTCGCTGCGGGGGGAGCTGGTGCCATATCTGGTGCGTAAGCAGTTCACGAAAGTCTTAAACGACCAGACGGATGACAAGCAGACAGAACAGAATCAGAAGATGAAAGATGCAAGCTCTTCCCTAGAGATCTTGAGCTCCTCCAAAGATGAGGGGCTACTGGAGCTTGCGCGAGATCGCTCCTGCTGGAATGATCATCGTGGAGACATGAGCGAGGCGTACCATGGCTCAAAGCTCCGCTGCTATGTGCATATCATGGAGGACGGCATGTGTTACCGCGTCAACACGCTGGCCGCGTACGTGGAGGCCAATCGCGTGGCTCCCAAACTGGTCGAAGAGCCTCCAGTTCACCCGTCTGCTGTGGTGTCTGAGAGAAGTCTCGTCGGAGGTGACAGCATCATCGGCGCGTTCAGCCAGATAGCAGACAAAACATCCATCAAACGCTCAACCATCGGCGCGTCCACCACAGTCAAGGAGAAAGTCAAGATAACGAACTCTATCATCATGAATGGTGTCACTATTGAAGAAGGGTGTAACATTCAAGGCAGTGTGATCTGTAACAACGCCACGATCGGACGAGGTGCTGACATTAAATACTGTCTGGTGGGAAGCGGCCAGCGCATCGAGCCAGAGGctgaAAGGACCAATGATGTCATCGTTGGATCAGATCAGCTCATGGAGATCTAG

Function

GO:

id name namespace
GO:0051716 cellular response to stimulus biological_process
GO:0006413 translational initiation biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0005851 eukaryotic translation initiation factor 2B complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03241 EIF2B3; translation initiation factor eIF-2B subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83664 lncRNA downstream 46818 24872630 ~ 24872833 (-) True G70540
TU83444 lncRNA downstream 353140 24566201 ~ 24566511 (-) False ccdc24
TU83122 lncRNA downstream 739787 24179031 ~ 24179864 (-) True G70044
TU83096 lncRNA downstream 773410 24145890 ~ 24146241 (-) True G70027
TU83095 lncRNA downstream 773867 24145578 ~ 24145784 (-) True G70026
TU84048 lncRNA upstream 445834 25409714 ~ 25445048 (-) True G70906
TU84116 lncRNA upstream 589197 25553077 ~ 25554229 (-) True G70970
TU84165 lncRNA upstream 607429 25571309 ~ 25571525 (-) True G71013
TU84189 lncRNA upstream 646357 25610237 ~ 25610440 (-) True G71037
XR_004578064.1 lncRNA upstream 767513 25731393 ~ 25782894 (-) True LOC117597162
XM_026936660.2 mRNA downstream 7861 24883746 ~ 24911790 (-) True ptch2
XM_026937077.2 mRNA downstream 164538 24748101 ~ 24755113 (-) True atp6v0b
XM_026937068.2 mRNA downstream 179391 24601870 ~ 24740260 (-) True b4galt2
XM_026936541.2 mRNA downstream 333603 24565741 ~ 24586048 (-) True ccdc24
XM_034303672.1 mRNA upstream 49326 25013206 ~ 25022416 (-) False cenpl
XM_026937139.2 mRNA upstream 49326 25013206 ~ 25021393 (-) True cenpl
XM_026937140.2 mRNA upstream 49326 25013206 ~ 25021379 (-) False cenpl
XM_034303670.1 mRNA upstream 49326 25013206 ~ 25021077 (-) False cenpl
XM_034303671.1 mRNA upstream 49326 25013206 ~ 25021064 (-) False cenpl
TU83344 other downstream 614725 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 882797 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 1387635 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 1401981 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 1403292 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 1409878 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 1508200 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 1573222 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 2132722 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 2239903 27203783 ~ 27204186 (-) True G71909

Expression Profile