Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026937343.2 |
| length | 1278 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 3 |
| gene id | rab39bb |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 11622885 ~ 11626845 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0005525 | GTP binding | molecular_function |
| id | description |
|---|---|
| K07925 | RAB39B; Ras-related protein Rab-39B |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU74484 | lncRNA | downstream | 11228 | 11611120 ~ 11611657 (-) | True | G62832 |
| TU74483 | lncRNA | downstream | 12764 | 11609921 ~ 11610121 (-) | True | G62831 |
| TU74482 | lncRNA | downstream | 13111 | 11609548 ~ 11609774 (-) | True | G62830 |
| TU74459 | lncRNA | downstream | 14938 | 11557584 ~ 11607947 (-) | False | G62813 |
| TU74456 | lncRNA | downstream | 14938 | 11581571 ~ 11607947 (-) | False | G62813 |
| TU74466 | lncRNA | upstream | 29785 | 11656630 ~ 11705457 (-) | False | G62817 |
| TU74465 | lncRNA | upstream | 36153 | 11662998 ~ 11705457 (-) | True | G62817 |
| TU74498 | lncRNA | upstream | 54823 | 11681668 ~ 11683016 (-) | True | G62846 |
| TU74501 | lncRNA | upstream | 59069 | 11685914 ~ 11688951 (-) | True | G62849 |
| TU74502 | lncRNA | upstream | 64350 | 11691195 ~ 11693318 (-) | True | G62850 |
| XM_034303833.1 | mRNA | downstream | 87642 | 11524826 ~ 11535243 (-) | True | LOC117597110 |
| XM_034303241.1 | mRNA | downstream | 103234 | 11509731 ~ 11519651 (-) | False | LOC113540344 |
| XM_034303239.1 | mRNA | downstream | 103960 | 11509731 ~ 11518925 (-) | True | LOC113540344 |
| XM_034303240.1 | mRNA | downstream | 104231 | 11509731 ~ 11518654 (-) | False | LOC113540344 |
| XM_026936779.2 | mRNA | downstream | 190633 | 11426298 ~ 11432252 (-) | False | syt4 |
| XM_034303303.1 | mRNA | upstream | 90500 | 11717345 ~ 11796600 (-) | False | si:dkey-172j4.3 |
| XM_034303300.1 | mRNA | upstream | 90500 | 11717345 ~ 11796600 (-) | True | si:dkey-172j4.3 |
| XM_034303301.1 | mRNA | upstream | 90500 | 11717345 ~ 11751713 (-) | False | si:dkey-172j4.3 |
| XM_034303299.1 | mRNA | upstream | 90500 | 11717345 ~ 11743538 (-) | False | si:dkey-172j4.3 |
| XM_034303298.1 | mRNA | upstream | 90500 | 11717345 ~ 11743538 (-) | False | si:dkey-172j4.3 |
| TU74378 | other | downstream | 87872 | 11533764 ~ 11535013 (-) | False | LOC117597110 |
| XR_003404120.1 | other | downstream | 408463 | 11214322 ~ 11214422 (-) | True | LOC113540752 |
| XR_003404119.1 | other | downstream | 409951 | 11212834 ~ 11212934 (-) | True | LOC113540751 |
| XR_003404121.1 | other | downstream | 414052 | 11208733 ~ 11208833 (-) | True | LOC113540753 |
| TU74341 | other | downstream | 440572 | 11177711 ~ 11182313 (-) | False | mrpl52 |
| TU74889 | other | upstream | 620429 | 12247274 ~ 12249056 (-) | False | si:dkey-165a24.9 |
| TU74900 | other | upstream | 645373 | 12272218 ~ 12277612 (-) | True | LOC113539775 |
| TU74899 | other | upstream | 645527 | 12272372 ~ 12277612 (-) | False | LOC113539775 |
| TU74901 | other | upstream | 645527 | 12272372 ~ 12277669 (-) | False | LOC113539775 |
| XR_003404098.1 | other | upstream | 1577428 | 13204273 ~ 13204462 (-) | True | LOC113540725 |
