RNA id: XM_034303292.1


Basic Information

Item Value
RNA id XM_034303292.1
length 4120
RNA type mRNA
GC content 0.50
exon number 22
gene id cfap57
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27108812 ~ 27143851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTGTAAACTGTGGATGGATGTTAAAAGATCTCGAGCTGTGTCGTCTAGGCTAGGAAATTATCACGAGTAACAACCTGGACGTAATTATTTTCAGTTGCAGTTAATTTAGCGTTTACAGGAGAGCCTGGTGCACATATTAACGCAGCATGCAATAAATATATGACTTATGACGTATAATTTATTGTGCagttctttttcctctctcgcGTTTCCTTGGAGATTGCTTTAAGATTGTTCCATCTTGTGAATTTGAGGAATAATGGCTGAAGTTGAGGTCCACCTGCACCACATTTTCGGTTTGCGCGCAGCAGTGAGAAATAATTTGCACTTTCTTGACGAGCAAACGGTCATTTTTCCGTGCGGGAACAACTGCGCGCGCTACAACATACACCAACGATGCTACAAGTTCATTGCAGGTACAGAGAGGAGCCAGGGCATGCAGGCTCTTGCCATTAGCCCCAACTGGCGCTATCTGGCTGTGTCAGAGTGCGGCGAGAGAGGCACCATCACCATCTACGATCTGCAGCATGAACAGAGCCGTAAAAAGAAGGTGCTGACGGGTGGCAATGTCAACGTGCAGGAGTTTGTCTGTATGGCATTCTCTCCTGACTCAAAGTACCTGCTGGGCCAGGGTGGAGGACCCGAGTGGACCCTCGTCTACTGGGTGTGGGAGAAAAATAAGGTCATGGCTACAGTGAAGAGCACAAATGCCGGCCCTGTCTATCAGGTCAGCTTTAACCCTCAGGACAATACACAGATCTGTGTGAGCGGGAATGGTGTGTTCAAGCTTTTCCGCTATGTGGACGGCTCCCTGAAACAGACCAACTCTGCAAAGCTGGAGACGCAGAACATCCTGTCTCACGCATGGATGTCTGAGGAGCGCATCATCGCTGGAACGGAGACGGGACGACTGCTGGTGTTCGAGTCAGGAGACCTGCGTTGGGAGATGAGCGTGGCCAGCAAGATAACTGAACAGGAGACTGTGAGACAAAAGGAGGACGAGACCCCATCAGCTCCGGCCTTGATGCCGCGAGTGACCATCATCAAGGCTTATTCTAAAGGCTTTGCATGTTCAGCTGGTCCAGgaactgtgtgtctgtttgaGAAAActgaggagaaggacagttatAGACAAATCAGGGAAATAAGGATACCTCCGGACCCGTGCAGCAATGAGCCAAGTCAGGCAGAGCAGCAGGAGATTGCCACAATGTGTATCAGCCCATCAGAGGAGACTCTGGCCACCAGCACAGACCACGGCCAAATCTATCTCATTGCACTCGCTTCGGCTGAGATGAGCAAGGGTATGCGGGCTCACTTTGAgtttctctcccactcttttcACTCTGGGATCATCAccggtctgtctgtctgcatccGCAAACCGCTCATCGCCACCTGCTCCATGGATCACTCCATACGCATCTGGAATTATGAAACTGGtgcTTTGGAGCTGTATAAGGAGTTCCAAGAGGAGTCGTACAGTGTGGCACTGCACCCATCCGGCCTCTTTATCCTGGCGGGCTTCTCTGACAAGCTCCGCCTCATGAACCTGCTCATTGATGACATCCGCACCTTCAAGGAGTTCACCGTGCGCAGCTGCCGAGAGtgtgtgttcagccaCGGGGGTCACATGTTTGCTGCTGTCAACGGTAATGTGATTCATCTCTACTCCACCACGACCTTTGACAACATCCTGAATCTGAAAGGTCACAGTGGCAAGGTGCGGTCAGTGGTGTGGAGTGCTGATGACAGTCGTCTGGTGTCGTGTGGAATGGACGGAGCCGTGTATGAGTGGAATGCTCTGAATGGCCAACGTGAGTCCGAGAGCGTGTTGAAGTCGTGCAGTTACACCAGCGTGGCGATCTCGCCTGACACCAGGAGCATTCTCGCCGCGGGCAACGACTGCACGCTGAAGGAGATCCAGGACTGCAAGATCCTGAGGGAAGTGGCCTCCGATGATGTGAGCTACACATCCATTGTCATGACTCGCTCAGGCCGAGCACTCTTCACCGGGACCAGCAGCGGCACCATAAGGGCCATCAAGTACCCTTTACTCATGCAAAAAGACTGGACAGAGTACCAGGCCCATTCTGGTCCCATCACTaaaATGGTGATCACGTTCGATGATCAGTACCTTCTGAGTGCTTCAGAAGATGGCTGTCTCTTCATCTGGAAAATCACTGAGCAGGAAGGACGCGGGCTGAAGAGGGACAAAGAAATGAGCTATGCGGAGGAGATTCTCATCACCAAGTCTGATCTGGAGGAAAAGAACCAAATCATACTGGAACTTAAGACCCGGGTGGAAGAGCTGAAGATGGAGAATGAGTACCAGCTACGTCTTAAGGACATGAACTACAATGAGAAGATCAAGGAACTCACAGAGAAGTTCAGCCAGCAGATAGAGTCGCTTACAACCCAAAACCAGGTGCTGAAATCGGAGAAGGAGAAGCAGGAGGTCACACACCAGGGAGCGCTAAAGGACATTACAGAGAAATACGCTAAAGAGCAGCACGATCTGGAATCCACCAACAACCAGAAGCTGATGCTGGAGTACGAGAAGCACCAGGAGATGCAGCTGAAATTGCAGAAGATGCAGGAGAGCTATGAGGAGAAGCTGCACGATCTGGAGGATGGCCGTCTGCGTGCCCTGGAGGACATGACGCAGTTCTATGAGGCCAAGCTGCAGGAGAAGGTGCTCGAGCTGGGCCAGTGTCAGGATGAGTCTCAGCAGCAGTTGCGAGAGTTTGAGGAAATAAAGAAGCAGATAGAGGAAGACAGCGATCTCGAGCTCCACGACATCCGTGTCAAATACGAACGCAAGCTCTGGGAGGAAAAGGAGACCAACTTGAAGCTCAATGGAGAGACGAGAGTCATGAAGAAGAAGTTCACCAGCCTGCAGAGGGAGATTGACAACCGCAACCTGGACATCGAGAAGCTGAAGGTGGAGCAGCAGAAGCTGCATGGTGTCATCAAGGCTCTGGAGAAGGACATCATGGGACTGAAGAGGGAGATCCAGGAGAGAGACGAGACCATCCAGGACAAGGAAAACCGCATCTATGATCTTAAGAAGAAGAACGAGGAGCTGGAGAAGTTCAAATTCGTGCTGGATTACAAAGTCAGTGAGCTGAAGAAGCAAATTGAGCCACGAGAGAATGaagtgaaggagatgaaggaaCAGGTCCATGAGATGGAGGCTGAATTGGAACAGTTCCGTAAGAAGAGCACTCAGCTGGAGCTTACCATTActgagctgaagctgaagctcaAAGCCACGGATAaggagaggcagaaagagatgCAGAGGATCAGAGATGTAGAAGCTGTACTGCACAGGTTTAAGACCGATCTTCACAACTGTGTGGGCTTCATCCAGGAACCTAAGAAGCTGAAGGAGAGCATTCGAGAGATCTATGAACGCTATGTCCAGCAGTCAGATGTGGTGGAGATAGTGGGAGTGGATGCTGATGTCCAGCGAGAGTACAGCAGGCAGAGGGAGCACATGGAGAGGAACATGGACTCGCTCAAAAGGAGACTAGCAAAGGACATCAAAGTGCATGAAGCAAAAAACATCAAGCTCATGAAGGAGAACGTCTCCCTTATTAAAGAGATTAATGATTTGCGGATGGAGCTGAGGCTGATGCGAGCACAGATCCATGACTACGAAACCCAGAGTGGCTTCAATAAGAATAAGTCCAAGAGTGCCACGTACATCAAGCCAGCGCCATCCTCAGTGGCGTCACGGCTGAACTTTGAGGGCGAGGCTGAGCGCATCATCGAGCAGCAACGCCTCGAGATCCAGCGGCTGAGGCAGGAAATGCTAggtcaaggtcaaggtcaaggtCAGGATCAAAGCTTCGTCCTGCCAAGCAACATCAAACTACCAGCCCTGACCACATAAACCCTCTTCATACCACATACACATTCGTTACAGCACGTACACACTCTTCACACCACATACACGCTCATTacaccacacaaacactcttCACACCACATATACACTCATTACACCACACACCCACTCCATATACACACTTATTACAGAACATACATACTCCTCTCCTCACACCACATAGACACTCttcacaccacatacacacacttaaataaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85140 lncRNA downstream 72350 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA downstream 72960 27031317 ~ 27035852 (-) False G71815
TU85066 lncRNA downstream 173615 26934990 ~ 26935197 (-) True G71765
TU85065 lncRNA downstream 213248 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 249357 26847346 ~ 26859455 (-) True G71734
TU85183 lncRNA upstream 5059 27148910 ~ 27151314 (-) True G71854
TU85228 lncRNA upstream 30201 27174052 ~ 27174536 (-) True G71892
TU85232 lncRNA upstream 36083 27179934 ~ 27180140 (-) True G71896
TU85239 lncRNA upstream 47611 27191462 ~ 27191809 (-) True G71903
TU85241 lncRNA upstream 51639 27195490 ~ 27195813 (-) True G71905
XM_034303296.1 mRNA downstream 401 27105494 ~ 27108411 (-) False tmem125b
XM_026935890.2 mRNA downstream 401 27105494 ~ 27108411 (-) True tmem125b
XM_026935891.2 mRNA downstream 1023 27105494 ~ 27107789 (-) False tmem125b
XM_026937110.2 mRNA downstream 126603 26981189 ~ 26982209 (-) True LOC113540546
XM_026936874.2 mRNA downstream 175293 26917159 ~ 26933519 (-) True prkci
XM_026936204.2 mRNA upstream 9648 27153499 ~ 27158015 (-) True LOC113540028
XM_026936576.2 mRNA upstream 94093 27237944 ~ 27261901 (-) False LOC113540236
XM_026936577.2 mRNA upstream 94093 27237944 ~ 27261901 (-) True LOC113540236
XM_026936091.2 mRNA upstream 143310 27287161 ~ 27310976 (-) True LOC113539949
XM_034304155.1 mRNA upstream 237324 27381175 ~ 27385533 (-) True si:ch211-107p11.3
TU85159 other downstream 7954 27096602 ~ 27100858 (-) True G71832
TU84853 other downstream 557782 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 557782 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 732724 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2803886 24304374 ~ 24304926 (-) True G70255
TU85245 other upstream 59932 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 251506 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 252300 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 284569 27428420 ~ 27432678 (-) False LOC113540508
XR_004578066.1 other upstream 403901 27547752 ~ 27555986 (-) False pcyt1aa

Expression Profile