RNA id: XM_034303299.1


Basic Information

Item Value
RNA id XM_034303299.1
length 4884
RNA type mRNA
GC content 0.47
exon number 27
gene id si:dkey-172j4.3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11717345 ~ 11796600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTCTTTTGTTGTAGTCCCTTATATTTGATGAGGTCGACCTTTCTGATGCCAGCGTGGCAGAAACAAGCACCAAGAACATAAACAACAGTTTTACAGTGATCACTCCTTTCCGTAAGCTGATGCTATGTGCAGAGAGCAGGAAGGAGATGGAGGATTGGATCAGTGCTCTGAAGTCTGTACAGAAATGGGAGACATATGAGGCCAGTCAGTTTAATATGGAACACTTCTCCGGGATGCATAATTGGTATGCGTGCTCTCATGCTCGCCCTACATTCTGTAACGTCTGTCGGGAGGCACTGCCAGGAGTCACCTCTCACGGCCTGTCCTGTGAAGTGTGTAAGTTTAAAGCTCATAAACGCTGTGCTGTCCGATCCACTAACACCTGTAAGTGGACCACGCTGGCTTCTATAGGAAATGACATCATCGAGGATGAAGATGGGGTGTCCATGCCTCACCAATGGCTGGAGGGGAACCTGCCGGTCAGTGCtaagtgtgtggtgtgtgatcgGACATGCGGCAGTGTGCGCAGGCTGCAGGACTGGCGCTGTCTCTGGTGCAAAGCCATCGTACACAGTAGCTGTAAGGAGCAGTTGGGGAAGGTGTGTCCTCTGGGTCAGTGTAAAGTGTCCATCATTCCTCCCACAGCTCTCAACAGCATTGATTCAGATGggtTCTGGAAAGCCACAAGTCCATCCTGCTCCAGTCCTCTGCTGGTGTTGGTGAACAGTAAGAGTGGCGATAACCAGGGTGTGAAGTTCCTGCGCAAGTTCAAACAGCTGCTCAACCCTGCACAGGTCTTTGACCTCATGAATGGAGGACCACAGCTGGGactacGCCTATTCCAGAAGTTTGTGACATTTCGTATCCTGGTGTGTGGAGGTGATGGCAGTGTCGGTTGGGTTCTGTCTGAACTGGATAAACTAGGACTGCACAAGCAGTGCCAGTTGGGCGTGCTTCCCTTGGGCACAGGAAATGACCTGGCACGGGTGCTGGGTTGGGGGGggttgtgtgatgatgatgcaCAGCTGCTGCAGATCCTGGAGAAACTGGAGAGAGCTACCACCAAGATGTTggacagATGGAGTGTAATGACTTATGAAGTTCCCACCAAAACTGCACCTGTTATTGTTAAAGATGACGATCCACCGGATTCTCCACTCCAGATTACTCATTATGCTGACTCTGTCGCCTCTCATCTGACAAAAATCTTGGACTCGGACAAACACAGTGATGTCATATCCTCTGCTAAgtttttgtgtggGACGGTCAATGAGTTTGTAGCTGAGGTTGGAAAAGCCTATGAGAAAGCCACTGAAAACAAGGAGGAGGCTGATGCTATGGCtaaaaagTGTGCCATGCTGAATGAAAAGCTGGACTCTCTGGTGCGGGCACTGAGCGAGGAGGCTGATGCTCAGCTAGTGCCTGCAGGCTCCCAGTCTCCTGAACAGGAGAGCGAGTCGAGCACCCCGAATGCCCCCAGTGTCCCCAGACCCTTCAGATCCAAAGAGCAGCTGATGCTGAGAGCCAACAGCCTGAAGAAAGCACTGCGGCAGATCATAGAGCAGGCAGAGAAAGTGGTGGATGAGCAGAACAGACACACTCAGGTGCAGAGGATGTCTTCGTCCTCTTCAATAAAAAGAGGCAGCAGCGAGGACCTCAAGGAGGCAGAGCCACGTCAAAGTGCCCTGAGTTCCACCACCCCCATAGTGCTGGAGAAAGCAGACAGCTGCAACAGCACCACAGCTTTTACTGAGgagCAATGcacagagaagtgtgtgatgaataACTACTTTGGAATTGGCCTGGATGCCAAAATCTCTCTGGAGTTCAACAACAAGAGGGATGAGCATCCTAAGAAGTGCAGCAGTCGCACGAAAAACATGATGTGGTACGGCGTCCTGGGGACCAAAGAGCTTGTTCAGAAAACCTACAAGAACCTGGAACAAAGAGTGCAgctggagtgtgatggtgtgccCATGTCTTTGCCCAGCCTGCAGGGTCTGGCTGTGCTCAACATCCCTAGTTATGCAGGGGGCATAAACTTTTGGGGAGGCACCAAGGAGGATAACAATTTCGGAGCACCATCATTTGATGATAAGAAGCTGGAGGTTGTGGCCGTGTTCGGCAGCATGCAGATGGCCATGTCTCGCGTCATTAACCTACAACATCATCGCATCACGCAGtGTCGGCAGGTAAAAATCACTATTAAAGGAGATGAGGGCGTTCCAGTGCAGGTGGACGGAGAGGCCTGGATCCAACCACCTGGCATTGTCCAGATCATCCACAAGAATCGTGCACAGATGCTTACCAGAGATcggGCTTTTGAGAGCACGCTGAAGTCGTGGGAGGATAAGAGGAAGTATGACAGCTGCCGCTCTGCTCGGCCACGTCTCAATTCGCAGCAGTCCATGGAATACCTGACCGAGGAGGAGTGTGCACAGGTGCAGCAACTCGGCCTGGTGGCTGACTCACTCATTAACAGgatacgGGATGTGGCTAAGACCCATAAGGTGGTGGAACAGGAGTTGGCTCACGCAGTAAATGCCTGTGCTGCTGTCCTCACTGAGGCCTTTCCCTCTAAACCCTCCAGCCCAGAGTGTCTGAGTCGCAGCACCGCTGTGGAGATTGTCAACAGCAGTAAAGTGCTGCAGCAGGAGACTAAAATGCTGTTAGAAGGGAAACTGCTGTTGGAGGCTCCTCAGGAGGAAGAGCTGCTTTCCACGCTCAACTCTCTCAGTGCTGAGTTAATCAAACTGGAGGACATCCACTGGATCTGTCCCAGCATGCATTGCTCCGAGGAGGACTCATCCCGCACGAGTGCTAAGAGCAGCAGCATGAAGCTGAAGATCATACCCAAAgtaaagaaggagagagagaagctgcaTAAGCAGCGCTCCAACAGCTCTCTCTCAGCGGAGAGATGGGGTGCGGAGGAGGTGGGCACGTGGCTGGATTCGTTGGGGTTAGGGGAGTACAGGGAGAGGTTTGTGGCCCGGGACATCCAGGGCTGGCAGCTGGCTCAGCTCCAGAGACAAGACCTGAAGGATCTTGGGATATCAAAGGTGGGTCATGTGAAACGGATCCTGCAGGCAATTGAAGAGCTGGAGGGTCTGCTGTAGTGGACACACCGCGCCACAGGAAGCTGCCTTTCACCGAGGAATGGGTGTTCGGAGCTAACTATCACACACTTCATGTGTGTGAGCGGCTGTGAGAGGCATGGCATCGCACTGCACTGCATCGACGTTCCAGTTACgttctctgtctgtcctctgcCTGCTGGTGCCCTTGGTGATCAATAGACACTGGGAGTACAGGACAGTACCCAGAATCCTTTTCTGcattctttatttgtttctatGACCCGTATGATTTCCTATGCTCTTCTTCTCACGGATGAGACAgaccttccttccttcttttaatgatttccttcctttttttcctcttttttggtCTGCTTTTAAAGCCAAGCGATGCAAACTGGTATTTCCAGAAAACTCTCCTTTTGAGTCATCtgaacaacattaaatgaacaaattttaaaatgcaaaaaaaaagcatctgaaATGTATTGTGGATTTGTATTAGCAGTCAAAATGCAATGTAAGAACTGCATTCTGTCTGATTCAGTCTCTCTATGTATTTAAAGACAGTTGGTGTTTCTGCATGCCTTTTGCGTCCACGATCCTcgagcagaaaaacaaaagctgttagatttcttttttttaattgaatagtCAGCCAAATAGTGCTATTGTGCCGCTCGTGTGCCAGGTGAGCTGTTGTTCTGCAAGCTATAGTGATGTAAATTTGTGCCAAGTTCCTCAACAAATCGCAGTGGTTACAGtgagctatttttttttctttttttcctccttttgaAAAAatcatgtggggaaaaaaacatgaacgtCGTACATTTCAGAAAGTGTTTTATCTCATTGCCTTGCACTTTAGTGAGGAAAACGGTCTTTAAAAAGCAAACTTGAAAGTGATGTGTTGTAAAAATATCCTCAGCTGTTTTTCATATGATGAAAAGTGTATCCCTATTTATTGCAAACCTATTAAGAGATGTGtgataaataatatattgtCAAACTATGATTGTTAAACCCATGTGTCTGTTGTCAGAGTTAGCTTTCGTAATCGTGCATAAGAATGACACATATCTACATTACATAATCTGTGTAATGGAAATCAATTCCcacaattattaataattaaggCTTGAACTCTGACCTACAAGCTTCACCTAATGAAGCAGGAGAGAGGCCTCGATGACTGCAGAATAAGTGAGCCAGTTTAAGAGTTACACATAACTGAGAGGAAAAGGGATGCATAGTAAAGGAATTATACTCTCTCCTTGATCAGTGTGAGCCAAAGTGGAACAGTATTTCAGTGCAGTGTTTTCAAAAGCTGGACTGTAAGATTTGCACGTGTATGCACATGTTCTCCAGGAAAtgattctctctgtctgttataCGGTCGTGATCAAAGTCCAGTGTCCCTTTTTTGTCTCCTCAAAGTGTCAAACTACTGACTGAGTGTTATCAGGGATGAGGGAGAAGCCTGTGGGTGTGGAAGCCACACAAAACCTTTGATTTCAGTTTTactttgaaaagaaaaaggggCTAAAAAAGACTACTCAGCTTTTTTGGTTATTCATAATACAGCATTGATGAGACTACTGcttactgtttattgtttactCTTGAAGTATGTAATTTAACTTTTGgaattatttaatatgttttttttatgccaTATGAGTTGCAGTTTACCTTCCATGGCTCTGAGTTTGTCTGTTGGCTGCTATCGCCTCTGATCCAGGATTGTTGCTGTTTATTTGaagcaaaaataaagtttgCCCATCGCTGTTTG

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74467 lncRNA downstream 11690 11698687 ~ 11705655 (-) True G62818
TU74465 lncRNA downstream 11888 11662998 ~ 11705457 (-) True G62817
TU74674 lncRNA upstream 123912 11867450 ~ 11867703 (-) True G63015
TU74690 lncRNA upstream 154307 11897845 ~ 11898101 (-) True G63031
TU74670 lncRNA upstream 193233 11936771 ~ 11966896 (-) False htr2cl1
TU74717 lncRNA upstream 229173 11972711 ~ 11972947 (-) True G63058
TU74721 lncRNA upstream 260469 12004007 ~ 12004319 (-) True G63062
XM_026937343.2 mRNA downstream 90500 11622885 ~ 11626845 (-) True rab39bb
XM_034303833.1 mRNA downstream 182102 11524826 ~ 11535243 (-) True LOC117597110
XM_034303241.1 mRNA downstream 197694 11509731 ~ 11519651 (-) False LOC113540344
XM_026935801.2 mRNA upstream 90830 11834368 ~ 11860113 (-) False zgc:109889
XM_026935800.2 mRNA upstream 90830 11834368 ~ 11860113 (-) False zgc:109889
XM_026935799.2 mRNA upstream 90830 11834368 ~ 11860113 (-) True zgc:109889
XM_034303929.1 mRNA upstream 90830 11834368 ~ 11850056 (-) False zgc:109889
XM_034303931.1 mRNA upstream 119087 11862625 ~ 11966903 (-) False htr2cl1
TU74378 other downstream 182332 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 502923 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 504411 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 508512 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 535032 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 503736 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 528680 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 528834 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 528834 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1460735 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile