RNA id: XM_034303417.1


Basic Information

Item Value
RNA id XM_034303417.1
length 1710
RNA type mRNA
GC content 0.45
exon number 2
gene id ugt5g1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12253245 ~ 12256515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAGTGTTTCCAGAAGATGGCAGCCACTGGGTGAATATGCAGGTCATACTCAAGGAGTTGCATGCCCGTGGCCACAGTCTGACAGTGGTACGACCTTCCAGAAGCTGCAGAAGGACGTGATGACCATGCTGAGGATATTCCACAGCGGAGCCCTGAGTATTGTTTCTACCATGTTGGATGACTCAGCACTGATGGGAAAACTGCGCGATGCTAAGTTTGACCTAATGCTCACTGACCCTGCTTTCCCTGCTGGGGTTCTCCTGGCCCACTATCTCCATTTACCCATGGTGTATAATGTACGCTGGCTCAATGCAGGAGACGCACATATGGCCATTGCTCCATCGACACCATCTTATGTTCCCATGTACAACTCATTGTTCAGTGACAGAATGGGCTTCCTGCAGAGGACTGAGAACTTCCTTCGATATATGTTCAGCCTCCTCCAGGAGCAATTTGTTATCCTCCCCATTTATGATGCATTGCTCAAGAGGCACTTTCCACCAGGATCAGATCTTCTCACCATGCAGCGTTCAGCAGATATTTGGTTGATGcgtgttgattttattttggagtACCCACGCCCTAGCATGCCTAATGTAGTTTACATAGGTGGCTTCCAGTGTCGCCCAGCTGAACCCATTCTTACAGAGCTGGAGGAGTTTATGCAGAGTTCTGGGGAGCATGGCGTGGTGGTCATGTCCCTGGGAGTCATGGTCACTGCGCTtccaaaacaaatcacagaAGCCATTGCGGCTGCCTTTGCTAAGCTACCTCAAAAAGTCGTATGGAGGTATGTGGGTGAGCGACCTTCATCTCTGGGTAACAACACTTTGCTTCTTGAATGGCTTCCTCAAAATAATCTCCTGGGGCACCCAAAGACATGTGCATTTGTGTCTCATGGTGGCACCAATGGCATCTACGAAGCTATCTACCACGGGATTCCTGTGTTGCTTCTGCCACTTCTCTTTGATCAGTTTGACAATGCAATTCGACTGGAAACCCGAGGTGCAGCTCGTGTGCTTGAGGTCGGCACATTGACTTCTGAAGAATTCCTTGAAGCCCTCGAGGATGTCATTAAGAATCCATCTTACAGAAGCAATATGCAGAAACTCTCAGAGCTTCACCGTGATCAGCCCCTTCCTCCTCTAGACAGTGCCACTTTCTGGATTGAGTATGTCATCAGGCACAAAGGAGCTCAACACCTGTACTCAGAAGGAAGTAGTCTTCCATGGTACTCCTACCACAATCTAGATGTGGTAGGTTTTCTGTTAGTCATCATTGTAGCTGTACTCTGGGCCTCAATATATCTTGTTAAATTTCTTTGTTGTATGCCAGACAAGAAGCAAAAGGTTGAGTGAACGCAACCTGAGCCACCTCTAGACATGCATTCTACAAAAGGTGCAAAGGTGtgtttttgggttgtttttttgttgttgttgttgtttgtttgtttggggtttttttttagcaaaagcACTTTAAGATGTAAATTAACTGTGATAACTAAAATTGCAGCCCTTTCAAAATAGATCATTTAATTCAAATCAATAGACATTATGTTTGCCACACAATCTTCATTACAGCCTTAACAAGTTTTAGATTATGCAATAAATCATTAATTTCTTGATTGATCAAAGGTAAATTCACTTCTAGTGCCATTTGTGATCATTACGATGTACATATGCCATTCTAGTGCCATTTGTACTCAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74852 lncRNA downstream 130235 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 248926 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 280298 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 286349 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 355144 11897845 ~ 11898101 (-) True G63031
TU74905 lncRNA upstream 17270 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 70358 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 99290 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 229772 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 412339 12667441 ~ 12670500 (-) True G63502
XM_026935929.2 mRNA downstream 3491 12246962 ~ 12249754 (-) True si:dkey-165a24.9
XM_026935927.2 mRNA downstream 10472 12227421 ~ 12242773 (-) True fxr2
XM_026935932.2 mRNA downstream 31306 12212987 ~ 12221939 (-) True ponzr6
XM_026936083.2 mRNA upstream 5634 12260736 ~ 12263489 (-) True LOC113539944
XM_026936202.2 mRNA upstream 8879 12263981 ~ 12265953 (-) True ponzr4
XM_026937070.2 mRNA upstream 12335 12267437 ~ 12269217 (-) True LOC113540514
XM_026937071.2 mRNA upstream 12335 12267437 ~ 12269156 (-) False LOC113540514
XM_026935820.2 mRNA upstream 17588 12272690 ~ 12277647 (-) False LOC113539775
TU74889 other downstream 4189 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74378 other downstream 718232 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 1038823 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 1040311 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 1044412 11208733 ~ 11208833 (-) True LOC113540753
TU74900 other upstream 17116 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 17270 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 17270 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 949171 13204273 ~ 13204462 (-) True LOC113540725
XR_003404087.1 other upstream 1648729 13903831 ~ 13904021 (-) True LOC113540713

Expression Profile