RNA id: XM_034303525.1


Basic Information

Item Value
RNA id XM_034303525.1
length 1930
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC113540041
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28911613 ~ 28918152 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atagagagggaaaaaaaccacAGGCTCAGAGTCTCAGAGCAGAGGAGAGTTGTGCTGCTGGTATTTATAGAGGCTGAATCCACAGCTCGGGAAGCCAGGAGGGGATTTTAATCAgcgtttatatttttattgtcacctcacacacacacacacacacacacacacacacacacgctcggaCAGAGGAAGAAGAACGAACCATGGGGAAAGACTACTATAAAATCCTAGGCATTTCGAAAGGAGCTGCAGAGGAGGATGTTAAAAAGGCGTACAGGAAACAGGCTCTGAAATGGCATCCGGATAAAAACAAGGCGCCCAACGCGGCGGAGAAATTCAAGGAGGTGGCCGAAGCGTATGAAGTCCTCAGCGACCCCAAAAAACGCGACATATACGACCAGTACGGAGAGGAAGGCCTGaaaggaggaggtggaggaggaggaggagcgtcCGATGGCCAGGGCAGCACCTTCACGTACACGTTCCATGGCGACCCACATGCCACCTTCGCCACCTTCTTTGGTGGCACCAACCCCTTCGAGATGTTCTTTGGACGCAAGGTGAACGGCAGAGACGATGAGGACATGGAAGTGGACACCGGTGACCCTTTTGGCTCCTTCACGAGTTTTAATCTGAACGGTTTCCCTCGTGACCGGCAGCCTCGGCGTAAGCAGGACCCGGCGATCCATCACGAACTGCGTGTCTCGCTCGAGGAGGTCTTTCACGGCTGTACCAAGCGCATGAAGATCTCACGCCGTCGCCTGAATGCTGACGGCCGCACCACACGCACTGAGGACAAGATCCTGTCCATCGAGATCAAGCGCGGCTGGAAGGAGGGCACCAAGATCACGTTCCCACGGGAGGGCGACGAGTCCCCCGGCTGCATCCCTGCCGACATCGTCTTCGTCATCAAGGACAAGCCGCACCCGCACTTCAGGAGAGAAGGGTCCGACATCGTCTACCCCGTCCGCATCAGTCTGCGCCAGATGTTGAGGCTCATGTTAATGGACTTTTTCTGGGACCATATTCATGGATATTGAGGATCATATTAAGAGATGTTGATGGTCAAGATCATGTTAATAAAGGTTTACAGATGTTGAGGGTCAAGTTAATAGATGTTTACAGATGTTCAGTGTTATGTTAATAGATGTTTACACATGTTGAGGATCAGGTTAGTGGATGTTTACAGATGTTGAGGGCGGGTGATGATAAAAGACGTTTATAGATGGCGTTTATATAAAATTGAGGGTCTTAACAGATGTGTACAGATGTTCAGGGTCCTGTTAATGcgtgtttatctgtttatggaTGTGGAGGGTCATATtaacagatgtttacagatGTTGAGAGTTTAGTAATGTTTacagatgactttttttttaacatgacgTTGAGGGTCACGGTGTTAAATTTTTACAGATGTCCAGTGTCATGTTAACAGCTGTTGAGAGTCATATTTCTGCTTTCAGATGTTGAGGGTTGTATTAACAGATGTTTACCCATGTTGAAGTTTATGATTGCTTTTTACAGCTGTTTACTGATCGGTTCAGATATCGAGGATTATGTTACCAgatgtttatgtatgtttgcAGATGTAAATTGATGTTTTGAGGTACAGTTAAAGTTGTTGAGATGTTGATTATGTGCATTTAGAAATGTTAACAGATGTTTACAGAAGCTGAAGATAGTGACAGATCGTCCTATGATGTTGAGAGTCGTTTAAACAGATGTTTACAGATGTTGACAGTTTTGGTGAAAAGGCCAATTCTACACAGTAGGAGTCACCTCATTATCCTGCACCTCAGCACACAATAAATATCATCCTTCATCGatctacagtattaaatataatcacCGATATatagtaagtaaggaataaaacacttggggatgtgctgttacaggaaaataatcaacaacggggtggtgtgat

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577988.1 lncRNA downstream 16880 28892016 ~ 28896799 (-) False LOC117597038
XR_004577986.1 lncRNA downstream 16880 28892016 ~ 28896799 (-) False LOC117597038
XR_004577987.1 lncRNA downstream 16880 28892016 ~ 28896799 (-) False LOC117597038
XR_004577985.1 lncRNA downstream 16880 28892016 ~ 28896799 (-) True LOC117597038
TU86430 lncRNA downstream 79959 28832384 ~ 28833720 (-) True G72893
TU86785 lncRNA upstream 22510 28940662 ~ 29029187 (-) False LOC113540203
XR_003404005.2 lncRNA upstream 22897 28941049 ~ 29029191 (-) False LOC113540203
TU86813 lncRNA upstream 68320 28986472 ~ 28988383 (-) True G73243
XR_004577953.1 lncRNA upstream 95088 29013240 ~ 29029191 (-) False LOC113540203
XR_004577955.1 lncRNA upstream 96862 29015014 ~ 29029191 (-) True LOC113540203
XM_034303526.1 mRNA downstream 33477 28877573 ~ 28880202 (-) True LOC117597036
XM_034303527.1 mRNA downstream 36776 28873579 ~ 28876903 (-) False LOC117597037
XM_026936503.2 mRNA downstream 52236 28842922 ~ 28861443 (-) True gipc2
XM_026936497.2 mRNA downstream 101375 28798977 ~ 28812304 (-) False LOC113540190
XM_026936498.2 mRNA upstream 136860 29055012 ~ 29077436 (-) True pigk
XM_026936482.2 mRNA upstream 213034 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA upstream 213034 29131186 ~ 29147359 (-) True zzz3
XM_034303995.1 mRNA upstream 232369 29150521 ~ 29171921 (-) True usp33
XM_034304142.1 mRNA upstream 382154 29300306 ~ 29322917 (-) False dipk2aa
XR_004577982.1 other downstream 28714 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 28714 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 31515 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 261254 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 676874 28236724 ~ 28236805 (-) True trnas-uga_2
TU86878 other upstream 230486 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 605242 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 605571 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 606357 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 606837 29524989 ~ 29525061 (-) True LOC113540703

Expression Profile