RNA id: XM_034303543.1


Basic Information

Item Value
RNA id XM_034303543.1
length 1612
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC113540124
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28173321 ~ 28196057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTGCTTTTCTAAAGTAACGTGTATCTGTGTTTAATCTGAAAGTTTTATGCCACAGTCTGAGGTGAACAATAAAGAAGATGAGGATTACTATCCtggctttttttatttggtcATGTCAGGCTGTGTGGGTAATTGCAGAAAACTGTCCACGTCCACCACTTGAAAACGGCTTTTTCGTCCCACATTTGGAAAAATACGACCATGGCGTTAGTATTTCCTACGGCTGTAACACGGGCCTGAAACCTGCTCTCGAAACATGGTGGGGAGAGATAACATGCAGAAATGGCCAATGGTCACACGAACCTCAGTGTATTGATAATACATGGTGTATTGCCCCACATGTGCCAAACGCCCAGCCTGTACATGAGTTACAAACATATTATCCTCCTAGTGACGATGTTAGTTTTAAATGTGACTACGGCTATGAGTTTGAAGGAGGAAAGTCAGAAGCACAGTGTGTAAATGGAACTTGGAGGCTGCCAGTGTGTAAACGAAAGCCTAAAACTTGTGATCCTCCTCCCCGTGTTTACAATGGAATGATCTTACAACCTTACCAGGATGTTTTCGAGCACGGGGATCAGCTTGAGTATGTTTGTGCAAAAGGATATAACCAACGTACAAGCAATTATAACACTTGTCATAACGGCAAGTGGTCCTCTAGTCCTAGTTGTGATAAgccactgtgtcctaaaccacaggTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATTATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGAAACTTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTGACAGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACGGTGTGTAGATGGAACTTGGAGGCTGCCAGTGTgtCAACTAAAGTGTAGTGTCCCACATGTGCCTAACGCCCGACCTCGAGAAGGGTTAGACGCTTCCTATAGTAGTGGAAGGTTTGTTACATTTGAATGTAACCGCGGCTATGAGTTTGCAGGATTACATTATGCACAGTGTGTAGATGGAACTTGGAGGGTGCCAGTGTGTAAACCTCGAGGTGAAACAGTGTGTACTGCTCCACATGTGCCAAACGCCAAACCTGCTAATGAGTTAGCATCGTTCTATGCTACTGGACGCACTGTTAGATTTGTATGTGACAGCGGCTATGAGTTTGAAGGAGCATCTTATGCACAGTGTGTATATGGAACTTGGAGGCTGCCCGTCTGTAAAGTGGTTGCAGTTGGATGTTGGTACAAAACCTTCCAGAAACTTAGGAaagatattaatttaaaaataaaaatgttccagGAGAACACGCTCATCCAGATTCCCATAGACATCATGACAGCTCTGAGGACCGTGGTGGATCTCTAGGTCCTGATACTGTGGTACTGTCGCCTGTCAGTATTTGTGGATCTCAACCCTTTATTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86125 lncRNA downstream 30070 28104546 ~ 28144866 (-) False G72658
TU86139 lncRNA downstream 34498 28138866 ~ 28140438 (-) True G72665
TU86124 lncRNA downstream 63464 28081544 ~ 28111472 (-) False G72658
TU86171 lncRNA upstream 1934 28197991 ~ 28199809 (-) False LOC117597043
TU86175 lncRNA upstream 3162 28199219 ~ 28199809 (-) False LOC117597043
TU86202 lncRNA upstream 147077 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA upstream 169600 28365657 ~ 28379132 (-) True G72720
TU86223 lncRNA upstream 201604 28397661 ~ 28471771 (-) True G72726
XM_034303545.1 mRNA downstream 3955 28157829 ~ 28170981 (-) False LOC113540126
XM_034303544.1 mRNA downstream 5459 28157829 ~ 28169477 (-) True LOC113540126
XM_034303980.1 mRNA downstream 34029 28124082 ~ 28140907 (-) False LOC113540134
XM_026936390.2 mRNA downstream 36168 28124082 ~ 28138768 (-) True LOC113540134
XM_026936392.2 mRNA downstream 52833 28117092 ~ 28122103 (-) True ahsg2
XM_034303546.1 mRNA upstream 1966 28198023 ~ 28225603 (-) True LOC117597043
XM_034303645.1 mRNA upstream 42839 28238896 ~ 28275315 (-) True cdc73
XM_034304138.1 mRNA upstream 80639 28276696 ~ 28286658 (-) True ro60
XM_026936156.2 mRNA upstream 280374 28476431 ~ 28491847 (-) True shha
XM_034303284.1 mRNA upstream 378851 28574908 ~ 28605243 (-) True lmbr1
XR_003404039.2 other downstream 133151 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 550128 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 553808 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 618950 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 742258 27428420 ~ 27432678 (-) False LOC113540508
trnas-uga_1 other upstream 40129 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 40667 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 452267 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 677521 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 677523 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile