RNA id: XM_034303708.1


Basic Information

Item Value
RNA id XM_034303708.1
length 2768
RNA type mRNA
GC content 0.50
exon number 20
gene id ubtfl
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23845044 ~ 23858386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATCGCTCGGGTGTGATGGAGGTTTGAGAGTTTGTGTTGCTGCAGTTCGGGTCAGAGCCACCTTGACTGTGTAGTCATGAATGGCAGCAGCAGCGTGGCTGGCACCCAGACTGGGCGAATCAAACTCGAACCAGacGGTGATGTGTGGAGTAAGGAGGACTGTCTGACACTGCTAGAGAGGATTAGGAGTCTGTTGCCTGATGGAGACACTTTGAAATACAAGACCACCGAGTCTCATTTTGACTGGGACAAAGTGGGCTTTGGAAACTACACCGGGGACATGTGTAAGCAGAAATGGCAGAAGGTTTCCACAGAGGTTCGGAAGTACAGGACAATGACAGAACTCATTGTCGATGCAATAGAATATGTAAAGAACCCTTATAAAGGAAAGAAACTGAAGACACATCCTGACTTCCCAAAGAAGCCCCTCACACCTTACTTTCGTTTCTTCATGGAGAAGAGAGCCAAGTATGCAAAAATCCACCCCGAGATGAGCAACCTAGATCTTACCAAGATCCTCTCCAAAAAATACAAAGAGCTccctgaaaagaaaaagCTCAAATACATTCAGGAATTCCAGAGGGAGAAGGAGTCCTTTGAGAAAAACATGGCACGGTTCAAAGAAGACCATCCTGAGCTGATAGAAGAGCGAAAGAAGTCAGACCTCCCAGAGAAGCCCAAAACCCCTCAGCAGCTGTGGTATAACCATGAAAAGAAAACCTTCATGAAACTTCACCCAGAGGTAAGTCAAAAGGAGCTGAAAGAAGCTTTACGGCGTCAGTGGTCTCAGCTCTCAGACAAAAAGCGGCTGAAATGGATCAGCAAAGCATTGGAGCTACAGAAGAACTATGAGGACAGCATGAGGGCATACCACGAAGCACACCCAGATGCAAACTCCGACGAGCACGTCAAGTCCGTCCTGACCAAAGCCGAGCGGCAGCTCAAGGACAAATTTGATGGACGGCCCACTAAGCCACCACCGAACGGATATTCTTTATACTGTGCCGAGCTGATGGTAAACATGAAGGACGTCCCAAGCACAGAGAGGATGGTCCTGTGCAGCAAGCAGTGGAAAATGATGACCCAGAAAGAGAAGGACATGTTCCAGAAGCGATGTGAAACGaaaaagaaacagtatgAGGTTGATCTCCAGAGGTTCCTTGAGACTCTGCCAGAAGAGGAACGAGATCGAGTACTGACTGAGGAGAAGCTGGGAGGCACCAAGCTGAGCATTGTGGGGGCAGGCAGCCCTTTTGTGACTAAGTCCCCATCAGGCAAGGACCGGGGTCGAGACACTGAGTTGGACCAGTGGGTCCACGGACTGCCAAAGGAGAAGAGAGACGGGAAGAAGAAGGTGCAACTTCCTGAGACGCCCAAAACAGCAGAGGAGATGTGGCAGCAGAGTGTGATCGGTGACTACCTGGCCAAATACAGGAATGACAGGAAGAAAGCTCAGAGTGCCATGGAGGCTACTTGGAAGGGCatggagaagaaagagaagattCCCTGGATCAAGAAGGCAGCCGAGGACCAGAAGCGATACGAGGTTCAGTACCGGACTGTGAGAGAGCTGGTCGAGATGAGGACCGTGCCATCGGGTCAAGGTCAGAGGAAGCCAAAGTTTGACGGAGAGCCCAAGAAACCTCCTGTGAGTGGCTATCAGATGTTTTCGCAGGAGCTGCTCACAAACGGTGAGCTAAACCATTTCAGCCTCAAGGAACGCATGGTGGAGATTGGCAAGCGCTGGCACAAGCTCAGCCAGGGCCAGAAGGACAAGTACAAGAAGCAGGTAGAAGAGCAGCAACTTGAGTACAAAGCAGAGTTGGATGCCTGGGTGAAGtctctctctcctcaggaGCGAGCCGTTTACAAAGAGTTCTCTTCGACGAAACGGCGGAGCACGTCAAAAGCGCGAGGTCCCGGAGCTAAAGTGCGTGTCACCAAGGGGAAGGCGGTAGGTGCCCGGGCTGCAGCGCTGGGGGCCGGGGGGGGCAAACGTTCCATGGCGTACCGGGTCAAGCAGGACACCTCAGACTCAGAGGAAGAAGACGATAAGACAAACTCAACAGACTCAGAGGATGAAGATGACGAGTCCTCTGCTTCCACAGATAGTGAAGATGAGGAcgatgatgaagaggatgagaatgatgaggatgatgacgAAGACGATGAAGACCAGTCAGATGGCTCGAGCAGCTCGTCGGAGGACAGCAGTGATTCAGATTCAGACTAATGAACCCGCCCTCTCAAAGGTTGGGGGCTGTGCAGGACACGCCCCCTAGCAACATCCCTCCCTGACAACAGGGGAGGGGCCGAGTAGCTGTGAGCACACAGCACGCGCTAATGCGTCTGTCTCTCGTCAGTGAGAGATGCAGGACTCAGCAGAGTGACAGCTCTTCTCTCTTTATATATACGTGTCCAGTTAACGGGCTTAAAGTCAAGTGGACAACCTCTTATTAACGAGCTGTTACTTGTGTGTCTATTGAAGCAATTTTTATTGCCTTTATATAGGTGTGTTATTAAAAATTGTGTTGCTcgttcctttttttattttatttttttgaaatgttaaCAGTGGTCTGAGGTGGAAAGTGGGAGAGAAGACCTTTTATAACAGAGGTAATGGAGAGTGGACCCCAGCTGCCTGGGTTTGTACACCTCAGCCAGTTCATTGAAGCTCAGAGAGCTGTATTAAGCTAGTCTGGTCTTGTTTGTTCATTCTTTGGACAAATCCTCCAAAAATAAATTgcactttttcctctttta

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82692 lncRNA downstream 193178 23651051 ~ 23651866 (-) True G69691
TU82643 lncRNA downstream 250500 23594331 ~ 23594544 (-) True G69649
TU82581 lncRNA downstream 390823 23453233 ~ 23454221 (-) True LOC113540115
TU82956 lncRNA upstream 63720 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 72947 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 279907 24138293 ~ 24138492 (-) True G70025
TU83095 lncRNA upstream 287192 24145578 ~ 24145784 (-) True G70026
TU83096 lncRNA upstream 287504 24145890 ~ 24146241 (-) True G70027
XM_026936883.2 mRNA downstream 1740 23784098 ~ 23843304 (-) False asap1a
XM_034303743.1 mRNA downstream 1740 23784098 ~ 23843304 (-) True asap1a
XM_026936885.2 mRNA downstream 1742 23784098 ~ 23843302 (-) False asap1a
XM_026936886.2 mRNA downstream 2343 23784098 ~ 23842701 (-) False asap1a
XM_034303745.1 mRNA downstream 22201 23784098 ~ 23822843 (-) False asap1a
XM_034303692.1 mRNA upstream 1486 23859872 ~ 23899907 (-) False slc4a2a
XM_034303693.1 mRNA upstream 1486 23859872 ~ 23899907 (-) False slc4a2a
XM_026936412.2 mRNA upstream 1486 23859872 ~ 23899907 (-) False slc4a2a
XM_034303691.1 mRNA upstream 1486 23859872 ~ 23898638 (-) False slc4a2a
XM_034303687.1 mRNA upstream 1486 23859872 ~ 23898638 (-) True slc4a2a
LOC117597117 other downstream 313028 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 327374 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 328685 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 330109 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 331005 23513456 ~ 23514039 (-) True LOC113540012
XR_003404116.1 other upstream 178332 24036718 ~ 24036854 (-) True LOC113540746
TU83344 other upstream 445988 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2515372 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2613694 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2678716 26537102 ~ 26551030 (-) False G71596

Expression Profile