RNA id: XM_034303845.1


Basic Information

Item Value
RNA id XM_034303845.1
length 6854
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113540005
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22653613 ~ 22662482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATACCACTCCCCATCATGACCCACAACATCCAGATGTTTTCTTGGGGAGCACTCAGACTCCACCCTCCAGACCCCTACTTGCATCCAAAGACTCAAAGAGAGTTTGCTTTTACAAGAGTGGAGACCCGCAGTTTTCTGGACACTGGGTAGTCATCAACAGTCGTACGTTCAAGACTTTTGATGCCCTGCTGGACGCCCTTTCAAACAAAGTGCCTCTACCATTTGGGGTACGCACCATCACAACACCCAAAGGTACACACACTATCCGGAGCTTAGATGATCTGCGGCATGGGGCCTCTTATGTGTGCTCAGATCAAAGAAAGGTCAAACCCCTGAACCTGGACGAGATCAACCGGAGACATGTCCCCTGGAACAGCACCAGACCTACTAGTGCAGGACGTCAGGGACGCAGAGGACTGATCCGGCAGCTAGTAAAGAAGAATGAAGTGGGCTGGATGGCAAAAATGGCTGAAAGTTCTGTGACAGTGAGGACACCAAAAAGGCTTGTGGTTTTTAAGAACAGGGATCCCAGCACTAAGCGCATAGTTGTTTTGCAGAGGAGGACAGCTCCGACTTTTGAGGCTCTCTTGGAATACCTTTCCCAAGTGATGCAGTTCTCTGTGGTTAAGCTATACACTGCTGATGGCAGACGCGTTGAAGGTCTTCCAGCCCTGATCCTGTGCTCTGGTGTGATTGTAGCAGCTGGTAATGAACCCTTTCAGCTGGCTAACTTCAATCTCCAAGCATCCACTCAACCCTCACACTCAGTCATATCTGAAACTACGGGGCCAACAAAGACACAGCCATTGCCACaagtTCAACAAAAATCAGTGAGCAGTAGACCAAGATCAAGAAATTTCTCATTATCATCAGAAAGATATTTTGTAAATCAGATCAATATGTCACTAAATGGAAGTCACTCAGAGGACAATGAAGTGAAAATAGGATCGATGGTGAGTGTGAACAACCAAGCCCTAGAATCAGAAGAGATGGAGAAATGTGACTTCATGTCTGGTATAGAGGAACAGGATCGCTTAATTATACCTTCAGATGATGAGATTGAGAAATCATTTCGTGTGAATCAGGATGGCAGCATGACTGTGGAGATGAAAGTTCATCTCACTATAAAGCAAGAGGAGATGATTCACTGGACCACCACAGTGAGTCGAACCTGCGTTAATAGCCAGGACATGGCAGCATTCTCGCAACCAGTCTCAAGCTACAACTCCCCAGATAATAAAGacaataataacagaaaaagagagtCAAATATAGACAACTATGAATCTAAAGATGAGAATACAAAAACTTATAAACCAATCAACTTAAATAAGGAGGGAGACAATCACTGTGGAAATACCATCACTGAGGCCTTGGAAAAACCAAAACCGCGTTTCAGGAGGCTGCCTACTCCAGGACCTAGGCGTGTCAGAAGGAAGGAGACTTCAATGGAGAATATAAAGAGGCTATCACAAACTGAGGTTCAGGAAAGCACAGCTGGTACATACTCATATGTGGAGCACACAGCTGAAGGTGAGCTACTGGAAGGGTACTGTGTTGTCAGTCATAGCAGCTCTAGCAGTACAAGACCTGTACCAAAACCCAGGAAGAAAAATTTGGGAGAATCCAAGCACAATAAgactcactcctctctctcaggGATGGCAGAGGTTCTTCAACTGCACAACAAAGGAAAAGAGATTACAGAAACTGTAATGCATATTCATCAGTCACAGGATACATATGAAAACTATTTTGCAAAAACCTGGGCTGATAAGGATGACAGGTTTGAATTTATGTCTCAAGAACACAAAAAGCCAGACTCAACTGAATCAGGGCCTCAATCTTCAAGCAATGACTGTGACACTGATCTTACCAAACCGTCTGCAAGTTCTGGTTCTGGGAATGCTAGGAACAAAGAACTCTTATCTTTGCTGTCTGGCCAAACAGACCTTTCACAAACAATAAGCAGCAGTGCATCCTCCTTCACCAACTATGAAACTCAAGCTAGATGTGAATCCTCAGACAAAGGAGTGGAGACATCCACTAAAGAGGACTCTGAAAATAAAAGAGTTCCAAgtaagaagacaaaaaaggcacaaaaaTCTGGAAGGTCAAACAAACGTGTGTTtttgcaaagcactgtgacAGATAAAAAGCAGAAAGGTAGTGTTCCAGACTTTTTAAAAGACCTAAAGAACAGCGATTCTCCAGAATCACAGAGCTGTACAGAAAGTGACAAATACGGGCAAAAGgttaaaaagagaaaggaaggtCGGTCACCTCAGAAGGTAAACGCATGTCATGGTAACATGTTGAGGGACACATCTCAATATATAAACTTAGGTCATACTCACATGTTAAGGCCTCacatgaaagaaaaattagACATTATCCCATCGTCTCATTCAGCACCTTTCAAGATTTTGACAAAGCAAAGGTCTGTGAATGGCAGCGTAACAAAATCTCCTAAAGAGAGCAAGGAGTTGAGTGAAAGTATTTCTATGCCAGTGCTCAATTCATCTCCCTGTAACGTGCACCAATATGTGGAAAACTGGCTGGAAAAAATTCACCCTGAATCAGTGCCCTATATGGATGAGTTAAACTCACATGAAGCTAGAGCTAGGTTCCAGATTGAAAGTGAGTTCTCAGACATTTCAGAAATGAGAAGCGAATTAGACAACAGTTTGGTGGAGAACTGTGCCTCTGTTGCAGGCTCTACTGTCAAGAAGCCAGTGTCACGACGACTTGTACAAATTAGGTATGAGGGAGAACCTGTGGAGGCAAAGAACCCTAGAAGATCCTGGAAATCAATGCCAAGTGTGAGAATACACACTGCTGAACAGGAGATTGGCACAAGAAAGAATAAGTCTTCAGAGGACTTGGTTCCCAAATTGCCAGATGCAGGGGGTGAAACATCACCAAACACACAGTTGAACCCTAGGTCAGGTATGAAACAAGTTTTGGAGCAGTTATGTTTATCTATCCAGTTTATCAGAAAAGCCTGTAGTCATTCTCATCTATCATCCttgaagaagaagcagaaatcCAGTAGCCTTCCTGACTTCTCATCACAGTTAGCCTCTGTTTTTGGCTCTCCATCTGAGGCACTTCTCTCCTTCCTGACACTGATGACTCTGAGAGATGGAATAGCCAACTCTGCCAATGAAGTCTCAGGTTCTGCCAATGCTAATAACTCAGGCAGCAATCCAGAGGCTCTGCAGGTCATGCAATCCATACAAAAATTGGCCAGCATAGAGGATGAAGAAGAGCTTAAGGCTAGCCTGGCAAGTCTCCACAGTTCAACTTCTGCTCAGTTAAAGAAGAGCTGGAGAGATTTCCAAGAGAAAAATAATATCAAAGAAAGTCCTCCACTGTCACCAAGACAGTCAGAGCAAGAGTTTGCTCTTGAGGTCAACTCAGAAGAGGAAGCTCAAGATAAAGGGCATATTTTTGGTATCAGAGAGATAATGGATGAGCTTAACATGTGTGAGGATCTCCGCAGAGAGATTTCCTCACTTGTTAGGGGTGATTTGACAAATTTCAATAAAGCAAGACCCACTATGGAGCATTTTGGTCATGAAAACGAAACCACCAATACTGCTTGTGAGAACGAGGATGCCACTATGCAAGACGATTTATGGGGGTACttagaggaagaaagaagataTTTAGAGGAGAGGGAAAGTCAATATGATGATATTACAAATACTAAGCCTGCAGATCTAGCCAAAGAATCTGAAGAATTACACCTACTCAAATCAATTTCCCATAAGCCAGCACTTCTGAGTAAAGAGCCAGCTATGGAAGAATCGGACATAAGGAAAAATGTCCAAATTGAGGATATGTCTAACCAAAATGGACTAGTTGCATATATAACTGAAATTGTGGATGATGTCAAGACAAACCAGGAAAGGTATGTAGATAATGAACCAAGCAAAGCAGATCTATGTGAGGAGAAACAGGAGATGATGGACAATGTCCAAATGATTGAGGAAAAGTACACAGAGGTTGAGATAAGCCAGGTTGATGAGTTTCAGGTGCCAGATAACAGTCCAACCAATCTGGAAGACAAAGTGGAATGGCAAGAAAATGTAGGTTGTATGCAATCTGAATCTGAACTGCTTTCTCCCACTTCAGAAATAGAGGCAAAAGATGTCAGAGAGGTGATTGATAACATTGTCAGTAAAATGGGAGATTGTACAGAAGGATGTGGCATAAATTCAAAGGAGGAAGACACCTACTCTGAAACCAGGGAATATCCTAAACAGCCAGATATAATGTCAGTGGCTTCAGAAACAGAGACTGAAGAGGCACACCACCCAAATAATGGCACTATCCAAACAGAAGAGAAGAATGCAATACACAAAGAGGCATCCGACTTTAGTGTAGATGAAGCTGATCCACacagtaatgataataatggcCTAAAGGACGATATGACTAACAATGACCGTGAAGAAACAATGTGTAGCATATCAGAATGTGAAAATCCAGCTGCTGAACAAGACCATTCTTCAGTGTCTGATCAAGAGGATGAACACTCTGACCACTACAAGTCAGCAACTTGCACATGGCAAGAATCAGAAATTCAACATGAGCTCCAGAAATCAGAGGAGGAAATTGTCACTGAGAAACAGACTGATAATGCTAGTGAGAATGATGAAGAAGcagatgaggatgaagattTTGATGCAGAACCAATCTCTTCTCTCCAGCTTCATCAAGAAGGTGAATATTCCGACCACTCAGAGTCTTATAAAGGTCAGGAAGTGGTAGCTGAACTTGACCTCCAGACATTGGAGGAGAAAAGTGTTGGTAAGAATCCGACTCATCCTGCTGAGGAGAAAGATGATGAAACAGATGAACATGATGACAAGCAGAGCAATGCTTTAGATACTGACAAAGACTTAGATACTCAGTCACACCACTGCTACTTGGAAGATCCTTCAGTCAAAGACTTTCTGAGGAGGGAATCATGCaaaagtgaggaaaaacacaaagcCCAGTCAGAGGATTCTGCAGGAATAGAAGAAGCAGATGTGGATCACGATTGTCATTGTGTGCATCCTACGGTGTTCCCCCAGCAGCTGCTGGATTTTGTCAACTTAGCACTGATGTCCTCTGCTCTGATTTTCACATATGATTCAAATGGCTGTCTACGAATCGAGCCAGACAGATGCAAAAACAGAGCAATGGCTTTATGTAAAAGCAATGTAGACAATCAGTATGCTAGGAGATGTCTTCCTAGCCCCAACACATCTGACCTCTCTGATTACAGGCCTGATACATCAGACAGTGGAGGAGACCTGTCCCAGGTTTCCACAGATCTTTTAACCGAGGGTGGAGAGGATGAGGCAGAGAGGCTGTTCATTTACCAAGGCAACATGAAGCAAAGCTCTGAGAACATCAACAGAAAAGTTAAAACCCTGGATAATGGTTCAAAGATACCTCATCTTGACACAAAACAAATAGCTAACCCTAATTTAAAGAGGATCAACAGTCTTAGCTCTTTTCCTGACTCCATGGTTAACAATACTATGCAGGACCCGGTCTATCACAACTCTTCAGACTCTATTGGGAATTCTGAGCTTGCACAGTGTCTAGCCTTTGATGCAAAGGCTGACTCTGGGGAAGGAATCCTGATAGATAAGGGCAGGTGGCTTCTTAAAGAAAATCACCTCATTCGTAAATCTCCTCCTGTTCCAATGGCAATGTATGAAAATGTAGATACAACATCGGTTGACACAGGTCAAGAAAACACAAGTGAGGAAGCCCCCTACATACCTTGTGGGAGAAAACAGTCCCCAAGAGCTGTCATATCCTCTTCTGAGCTGGAAGACATGGCCAAGCCTTCCACACCCAAGTGTACATACTTCAACATGGCTCACAGTAGTGACTCTGACCCTTTCCTGGATAACCAGAGCATTACGAGTAACAAAGGAAGAGGTTTCACTCGAAAAAGCAAGGAAGTATCACCACTAGGAGAAACATCGAAAATGTTGGCAAAGAAAAATGGAAGCCTCCCCTCTTTTGCATCTGTTGAGTTCAAACTGGCCGCCGGAAAAGTCCATCCCGAGGACGGCATGGCATCTAGTGTGGTGGAGAAATCTGCCAGATCCCAGAGCTGCCAGATCCCAGAGCATGCAAGATGCAACACATCACATGAAGAAGAGTCAGTAGAGGGTCTGAGTCTTAGATGTGGACAGCATTGCCCAATACTGTAAACCGCAACTATATATGTTAGTTGCCCCTCTACATTAAGGAAATGAAATATTGTGGGAGGATTACTCTTTAATCGTAATAGAGTTTACCCCTCAACTTTGGTGCCTCTATCAATAAAAGTTAATTGATAGTACTGATAGTAAAACTTGAAAGCAATTTAAAATATTGAGTGGGATTTAGAAGGTTTTAGTCCTGACTGCTTCACCAAGCATATTGCACAACTGGTCAGACTTGAAAACCTAAACCTTTGTAAGTGCTATTTGTCTTGTGGTTTTGGAGcatattcatcatttttaaaaagaaagttcataatcattaatataatgtttaaGTCATCGAAGTTCAGATGCATTTTAAATTGGCCATATGAACAAATGGGAATGTGATAGTATTAACGTAAATCTTGCCATTAGACATAAAATAAAGGCGCACCATGGAGCAATGGGCtgctaaaaaatttttttttttgtacagtgcaaTAACTTTGTTATCTCTTTTGGTTTATTAAGCTAATCTTCCTGTTCCAAAGAGTTTTAGCTGGATAatggctttttaaaatgataatgactttatttaacatgtttaacatGTACTGTATAAGTGTCCCACGTCTTGACGATTGTCA

Function

GO: NA

KEGG:

id description
K19538 RP1; retinitis pigmentosa 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82062 lncRNA downstream 1167 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA downstream 3069 22649939 ~ 22650544 (-) False G69183
TU82054 lncRNA downstream 22051 22629615 ~ 22631562 (-) True LOC113540019
TU82009 lncRNA downstream 134347 22515704 ~ 22519266 (-) True G69136
TU82012 lncRNA downstream 141303 22505790 ~ 22512310 (-) True G69139
TU82087 lncRNA upstream 14894 22677376 ~ 22677918 (-) True G69203
TU82121 lncRNA upstream 108904 22771386 ~ 22772012 (-) True G69233
TU82140 lncRNA upstream 140904 22803386 ~ 22805908 (-) True G69248
TU82146 lncRNA upstream 146424 22808906 ~ 22809249 (-) True G69254
TU82235 lncRNA upstream 392032 23054514 ~ 23055383 (-) True G69320
XM_034303443.1 mRNA downstream 17525 22631245 ~ 22636088 (-) False LOC113540019
XM_026936185.2 mRNA downstream 17670 22631245 ~ 22635943 (-) False LOC113540019
XM_026936186.2 mRNA downstream 17670 22631245 ~ 22635943 (-) False LOC113540019
XM_026936866.2 mRNA downstream 26590 22545958 ~ 22627023 (-) False ctnnd2b
XM_026936869.2 mRNA downstream 26591 22545958 ~ 22627022 (-) False ctnnd2b
XM_034303297.1 mRNA upstream 16707 22679189 ~ 22701151 (-) False rgs20
XM_026935863.2 mRNA upstream 16707 22679189 ~ 22690918 (-) False rgs20
XM_026935862.2 mRNA upstream 16707 22679189 ~ 22690918 (-) True rgs20
XM_026936105.2 mRNA upstream 175545 22838027 ~ 22851158 (-) True emilin2a
XM_026935864.2 mRNA upstream 324179 22986661 ~ 22990616 (-) True adcyap1b
TU82055 other downstream 17861 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 718444 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1235374 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 1282603 21368250 ~ 21371010 (-) False LOC113539989
XR_004578082.1 other upstream 631469 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 817483 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 817570 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 830897 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 832553 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile