RNA id: XM_034303848.1


Basic Information

Item Value
RNA id XM_034303848.1
length 1119
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113540011
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23446805 ~ 23463725 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGATGGTCATCATGCATTCAGTATCTTCTGGTGCAGTTTCAAGAGCTTCCTACACATCATTCAGCCGGCATGCATCTCTCACTGCAGTTatgtttattgatgattttTCTAATTAATCCAGTGCACAGTGCTGTGGAGCTGCATCAGAAGATCATAATGACTAAACCTACCACTAAGCTTGCCAAGATAGATTGTACCTTCCATTCAGAGTGTTCAGATTACATTCACTGGTATCAGAAGAAAGATGGTGAACCTTTCAAGAGAGTTCAGTATGTGGCCATCAATGATCAAACCCCCCGCAATGCACCTGGTTTTGAGAAACTGAAATCTGAGAAGATAGGAAATCAGTTTGTTTTGATAATCCCCAATTTAGAGAAAGAGCATTCAGCAACATATTACTTTGCCTGCTGGGTGTGGGCAGCACAGTGTGGCTACCTCTACAAAGTATTTGGATCTGGAACTCGGCTTACCGTCATTGAAAGAGGGAAGGAGGCCAAACAGCCTCAAGTGTCCGCGTATCCAGTGTCCACGCCACAAAATGAAAAGTCTGTTCTGCTGTGCCAGGCGAGAGGCATGTTCCCAGACCTGGTGAGATTCACGTGGAAAGCAAAAGATCAGAGGGGAAGCATATTGGAGCTGAAAGATGCTGAGCAGCtggagcagagagatgagaatCCGGTCCAAATAACCAGCATGCTCATCATAGACCAACACAAAGCCATGAACAATAAATTCACCTGCTCTGTTCAACATGACAGCAGCTTTAAGGACAACGAAGTAGACATTCCAAAAGAAGTCACTCAAAAGTCAAACGCAAATATTACCTGTCCATCTCCAAAAGCAGAAGAAGAGGACGAAGAGGAACCCATGAATACTGGTGTGTTTGAGCTCAGCCGCAGTCTGCATCTGTTCAGTGTGACGTATGTGATACTGCTGGTGAAAAACGTGTTGTATTTCTGCACTGTCTCTGTCTTACTATACAAGAGGAATTCTGCTAACATGGAGATGTTCAAGAGCAAAGCTCGCTGATCAGTCCATCAGCCAAATAGCAAGACTCAACACACCAACTTCCTTCagaattatatacacacacatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82494 lncRNA downstream 48842 23396664 ~ 23397963 (-) True G69551
TU82468 lncRNA downstream 115270 23331016 ~ 23331535 (-) False retreg1
TU82439 lncRNA downstream 168023 23278575 ~ 23278782 (-) True G69503
XR_004578004.1 lncRNA downstream 173191 23272162 ~ 23273614 (-) True LOC117597081
TU82235 lncRNA downstream 391422 23054514 ~ 23055383 (-) True G69320
TU82643 lncRNA upstream 130606 23594331 ~ 23594544 (-) True G69649
TU82692 lncRNA upstream 187326 23651051 ~ 23651866 (-) True G69691
TU82956 lncRNA upstream 458381 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 467608 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 674568 24138293 ~ 24138492 (-) True G70025
XM_034303847.1 mRNA downstream 4062 23430300 ~ 23442743 (-) True LOC117597115
XM_034303846.1 mRNA downstream 27915 23409414 ~ 23418890 (-) True LOC113540008
XM_026935903.2 mRNA downstream 63917 23376456 ~ 23382888 (-) True nol7
XM_026936871.2 mRNA downstream 100232 23331017 ~ 23346573 (-) True retreg1
XM_034303435.1 mRNA downstream 124210 23318535 ~ 23322595 (-) False and2
XM_034303623.1 mRNA upstream 2692 23466417 ~ 23505181 (-) False LOC113540113
XM_026936355.2 mRNA upstream 2692 23466417 ~ 23505181 (-) True LOC113540113
XM_026936182.2 mRNA upstream 73703 23537428 ~ 23544732 (-) True LOC113540016
XM_026936998.2 mRNA upstream 83445 23547170 ~ 23583496 (-) True amph
XM_034304072.1 mRNA upstream 83445 23547170 ~ 23583495 (-) False amph
XR_004578082.1 other downstream 139871 23293951 ~ 23306934 (-) False lrrcc1
TU82055 other downstream 811053 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1511636 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 2028566 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578105.1 other downstream 2075801 21368250 ~ 21371004 (-) False LOC113539989
LOC117597073 other upstream 16240 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 16327 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 29654 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 31310 23495035 ~ 23495897 (-) True LOC117597074
LOC117597075 other upstream 32232 23495957 ~ 23497021 (-) True LOC117597075

Expression Profile