RNA id: XM_034304030.1


Basic Information

Item Value
RNA id XM_034304030.1
length 1519
RNA type mRNA
GC content 0.51
exon number 8
gene id e2f5
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23285036 ~ 23291998 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAACCTAACGTCATTTCCgttcatttaaaaatccagCTCTCTGGTGTTACTCTGAGGTAAAAGCGGGGATAAAACATGAATgtgagtttttttccccacctcaGCTGTTACAGAGGTAGTTGTGTGTCATAGATAAGTGTTTCCTCTGAGTGAAGCTtgaccggtgtgtgtgtgtgtgagagtgtgttttgaGGACGGAGCGTGTTGTGTAGTATGGTACTATGGCTGAGTCGAGCAGCTCGAGCGTTTCGCACGCGGTTCCGAACGGGTCCAGTCGGCACGAGAAGAGTTTGGGACTCCTCGCCATCAAATTCGTCACACTGCTTCAAGAGACCAAAGACGGCATCCTCGATTTAAAAGTgGCTGCGGAGTGCCTGGCCGTCAGACAGAAGAGAAGGATCTACGACATCACGAATGTCCTCGAAGGGATCGGGCTCATCgagaaaaagactaaaaacaCCATCCAATGGAAGGGAGAGAGTTCAGGCTGCCAGCCTCAGGAGATCCTAGAGCAGGTGGAACTTCTGAAAGCTCAGATAGCTGAGCTGGAGAGGCAAGAAAGAGAGCTGGATATGCAGAAAGCATGTCTGCAGCAAAGCATCAAACACCTACAGGAAGACCCCAACAGCAGCAGATATAATTATGTGACTCATGAGGACATATGTGACGTGTTCAGCGGAGACACGCTCCTGGCAGTAATGGCACCTGCAGGGACGCAGCTGGAAGTCCCTGTGCCAGAAGTGTCTCAGAATGGCCAGAAGAGATACCAGGTGAATCTGCGGAGCCACTCGACTCCCATCCAGGTGCTGCTGATCAACAGAGAGACTTGTGGATCCAGACCTGTTGTCTTCTCCGTGCCGCCCCCGGATGATATTTGTGCCATGCCCACTCCGCCCAGCACACCTGCCAGCCTGCAGAAGTACCCTGTCACTTCAGAGTCCTGCAGTTTGGAGCACAGCCAGCTCAAGAGCCCAGTGCCTGAGCACCAGCTCACTCCCTTGTCTACTCCACCTGATGTTCATATGGAGTGCCACTCTGAATCCCCTGGCAGTCAGTGCTTGTTGATGCAGCCCCTTGGTGAACCAGAGGCTTCAGCGCAGCCTCATGGAGATCTGGGAGGACAGGATATGCAGTCCATGCTGGATGTGGGAAATCTGCTCCGACTCAACACTGTGGACCAAATGAAGGAGGAAAGAGAGGGTGTTGCTGATCTCATTGATGAACTCATGTCATCTGATGtCTTCCCCCTGTTGCGCCTCTCGCCCAACCACAGTGTGGATTACAGTTTCAACCTCGATGACAACGAGGGAGTGtgtgacctgtttgatgtccAGATTCTGAATTATTAAGAAAAGCCAAATTCTTCTGTGGACTTTGGCACAATTGTCTTCCCCTCCATGGTAACACTCCAGAGCATTGCCACTAATAAACGCCAACAACCACATTCAAAACAATCACTCTGTGCtctccacacactgcaccttGGCCtgaattcatattaatattattcatgtCTCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82439 lncRNA downstream 6254 23278575 ~ 23278782 (-) True G69503
XR_004578004.1 lncRNA downstream 11422 23272162 ~ 23273614 (-) True LOC117597081
TU82235 lncRNA downstream 229653 23054514 ~ 23055383 (-) True G69320
TU82146 lncRNA downstream 475787 22808906 ~ 22809249 (-) True G69254
TU82140 lncRNA downstream 479128 22803386 ~ 22805908 (-) True G69248
TU82468 lncRNA upstream 39047 23331016 ~ 23331535 (-) False retreg1
TU82494 lncRNA upstream 104695 23396664 ~ 23397963 (-) True G69551
TU82581 lncRNA upstream 161264 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA upstream 161371 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA upstream 161371 23453340 ~ 23454204 (-) False LOC113540115
XM_026936334.2 mRNA downstream 21739 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936335.2 mRNA downstream 21739 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936336.2 mRNA downstream 21739 23230050 ~ 23263297 (-) False si:ch211-106h4.9
XM_026936333.2 mRNA downstream 21739 23230050 ~ 23263297 (-) True si:ch211-106h4.9
XM_034304094.1 mRNA downstream 111137 23150126 ~ 23173899 (-) False mrc1b
XM_026935796.2 mRNA upstream 79 23292048 ~ 23306932 (-) False lrrcc1
XM_026935797.2 mRNA upstream 80 23292049 ~ 23306934 (-) False lrrcc1
XM_026935795.2 mRNA upstream 80 23292049 ~ 23306932 (-) True lrrcc1
XM_026936264.2 mRNA upstream 26566 23318535 ~ 23322611 (-) True and2
XM_034303435.1 mRNA upstream 26566 23318535 ~ 23322595 (-) False and2
TU82055 other downstream 649284 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1349867 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1866797 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1914026 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 1982 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 187996 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 188083 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 201410 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 203066 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile