RNA id: XM_034304122.1


Basic Information

Item Value
RNA id XM_034304122.1
length 1322
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC113539989
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21354619 ~ 21371010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGACGTGTGTGTGACCTGAGAGAAGATGGCGGAAAACGCTTCATGTATACCGTCTCGTTTAACGTCCTGTAGCCTATATGTGTTCATTTATGAAAgttaacagttttagataaaaTTACCTATTAAGGCCTGTAGTCTTACAGACAATGTCATTATTCATATCATAATTTTGAAGTCTTCAAACTCAGGACTGTTGAAAAATCCAGTTTGGTCTGACTCagctaccaaaacacacacaggctgagctAGAAGAAGCAATAGTGTGATGTTAGAAATAATTCAAATAGAGCTGCACTCCACCGACCAACATGAGAGAGCAGTTAAACACCTTTCAGCTCAATATGGGAAACTTGGCCACATTTACAGTGAGATTATGAATGACGCTTCAGCATTGCAGAAGGCTGCACTACAGGAACAGTCTCCTGGCACTGGCCATACCTTGGTACCATCACGCCAGCCATACATGAGTGAGCCTTTTGCCTCAAGGCGTGTGTGTTTCTATAAAAGCGGAGATGCCCAGTTTAGTGGTTTGCCTGTGGTCATCAACAACCGCACCTTCAAGACCTTTGAGGCATTGTTAGACAACCTGTCCAAGCGTGTTCCACTGCCGTTTGGAGTCCGCACTATTACAACACCACGTGGCCAGACAGCAGTCCGTTCTCTTGCTCAGCTTCACCACGGCCATTCGTACATCTGCTCGGATAAACGCACTGTCAAGCCCATCGACTTGGAGCAAGCACGGCGCAAACCACCACCATGGTACCATGCCAGCCCTGTCAGCAACAGGCGCCTGAGAGAGAGACGGAGTCCTGGCCCACGCAATACAAGAAGAAAAGAGCATGCTGCCTTACTGCACACCCCAAAGCGGCTGGTGGTTTTCCGCAATGGAGATCCAGAAGTCAAGCATACATTTTTGCTGCAGAAGAGGACCACACATTCGTTTGAGGCACTGCTTGATCATATATCTGAAGTCATGTGCTTCCCTGTGCGCAGGTTACACACACCAGATGGAAGGAGGGTGGATGGACTTCCTGCTCTGATCTTGTGTTTGGGTGTATTGGTAGCTGCTGGTCGTGAGCCTTTCAGAAAAGGAAACTATGATGTTCAAAAGCCCTTTGCTCCAACTTGGCTGCCAGCAAAAAGTGTAGGAAGGCTGCATCCTGTGACCACAAGAATCCACAGACAGTGGGGGAAACTGGTCACAAGAGACATCCAGTGGGGAGGATGACGCAAGTCGGTTAGCCATTGCCAAGGGTTTTGTCAGGAGAACCATTGAGAGGCTCTATGGAAGAGGTAATTCAAGTAGTGTAGGTGCAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81220 lncRNA downstream 25369 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA downstream 25369 21326076 ~ 21329250 (-) False G68462
TU81229 lncRNA downstream 33473 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 40746 21304764 ~ 21313873 (-) False chchd7
TU80840 lncRNA downstream 550515 20803417 ~ 20804104 (-) True G68186
TU81263 lncRNA upstream 36101 21407111 ~ 21408207 (-) True G68495
TU81290 lncRNA upstream 100622 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 101809 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 103577 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 125922 21496932 ~ 21501433 (-) True G68585
XM_026936370.2 mRNA downstream 3808 21337108 ~ 21350811 (-) True LOC113540120
XM_026936598.2 mRNA downstream 40722 21304692 ~ 21313897 (-) True chchd7
XM_026936917.2 mRNA downstream 105982 21235253 ~ 21248637 (-) False LOC113540421
XM_026936918.2 mRNA downstream 111114 21235253 ~ 21243505 (-) True LOC113540421
XM_026936000.2 mRNA downstream 120934 21227985 ~ 21233685 (-) True sdcbp
XM_026936104.2 mRNA upstream 5385 21376395 ~ 21379959 (-) True sox17
XM_026937164.2 mRNA upstream 28545 21399555 ~ 21401268 (-) True sox32
XM_026936006.2 mRNA upstream 42851 21413861 ~ 21417828 (-) True mrpl15
XM_026936203.2 mRNA upstream 56175 21427185 ~ 21430580 (-) True LOC113540027
XM_026935849.2 mRNA upstream 109605 21480615 ~ 21485813 (-) True fastkd3
TU81225 other downstream 25369 21326046 ~ 21329250 (-) False G68462
XR_003404107.1 other downstream 1210730 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1388781 19962616 ~ 19965838 (-) False snrpf
XR_004578056.1 other downstream 1411252 19931590 ~ 19943367 (-) False LOC113539792
trnaa-ugc other upstream 47158 21418168 ~ 21418239 (-) True trnaa-ugc
TU81579 other upstream 563516 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 1261175 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1922941 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 2108955 23479965 ~ 23483850 (-) True LOC117597073

Expression Profile